Name: Urbifossiella limnaea ETA_A1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167366

Type strain:

Species: Urbifossiella limnaea

Strain Designation: ETA_A1

Culture col. no.: DSM 103724, LMG 29796

Strain history: <- M. Jogler, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; ETA_A1 <- A. Stieler

NCBI tax ID(s): 2528023 (species)

SI-ID 398037

DSM 103724

Section

Urbifossiella limnaea ETA_A1 is a mesophilic bacterium that was isolated from surface freshwater samples.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Gemmatales*
	Family	*Gemmataceae*
	Genus	*Urbifossiella*
	Species	**Urbifossiella limnaea**
	Full Scientific Name (LPSN)	Urbifossiella limnaea Kallscheuer et al. 2021

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #68700]

Caption:

DSM 103724; scale bar represents 5 µm

[Ref.: #68700]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68700]

Culture medium

V2 MEDIUM (DSMZ Medium 1633)

[Ref.: #68700]

Culture medium growth

[Ref.: #68700]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68700]			growth	28 °C

[Ref.: #68700]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68700]	Sample type/isolated from	surface freshwater samples
[Ref.: #68700]	Geographic location (country and/or sea, region)	Wolfenbüttel. local duck pond
[Ref.: #68700]	Country	Germany
[Ref.: #68700]	Country ISO 3 Code	DEU
[Ref.: #68700]	Continent	Europe
[Ref.: #68700]	Geographic location	52.1606°/10.5444°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Urbifossiella limnaea strain ETA_A1 16S ribosomal RNA gene, partial sequence	MK559972	1497	ENA	2528023 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Urbifossiella limnaea ETA_A1	GCA_007747215	complete	GenBank	2528023 tax ID	*

[Ref.: #68700]

GC-content

71 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Urbifossiella limnaea ETA_A1 NCBI: GCA_007747215.1
[Ref.: #69480]	motile	no	83.713	no
[Ref.: #69480]	flagellated	no	96.353	no
[Ref.: #69480]	gram-positive	no	96.739	no
[Ref.: #69480]	anaerobic	no	95.563	no
[Ref.: #69480]	aerobic	yes	77.167	no
[Ref.: #69480]	halophile	no	91.028	no
[Ref.: #69480]	spore-forming	no	86.72	no
[Ref.: #69480]	glucose-util	yes	80.242	no
[Ref.: #69480]	thermophile	no	97.482	yes
[Ref.: #69480]	glucose-ferment	no	88.268	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

DSM 103724, LMG 29796

[Ref.: #114947]

SI-ID 398037

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68700

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103724

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114947

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398037.1 )

* These data were automatically processed and therefore are not curated

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