Name: Thermithiobacillus tepidarius DSM 3134
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16736

Type strain:

Species: Thermithiobacillus tepidarius

Culture col. no.: DSM 3134, ATCC 43215

Strain history: <- D. P. Kelly <- A. P. Wood, Univ. Warwick, Coventry, U.K. {1983}

NCBI tax ID(s): 1123368 (strain), 929 (species)

SI-ID 93015

ATCC 43215, DSM 3134

Section

Thermithiobacillus tepidarius DSM 3134 is a thermophilic, motile bacterium that was isolated from thermal sulfur spring.

motile
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Acidithiobacillia*
	Order	*Acidithiobacillales*
	Family	*Thermithiobacillaceae*
	Genus	*Thermithiobacillus*
	Species	**Thermithiobacillus tepidarius**
	Full Scientific Name (LPSN)	Thermithiobacillus tepidarius (Wood and Kelly 1985) Kelly and Wood 2000

Synonym

Thiobacillus tepidarius

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %97.576

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1309]

Culture medium

THERMITHIOBACILLUS MEDIUM (DSMZ Medium 333)

[Ref.: #1309]

Culture medium growth

[Ref.: #1309]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1309]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1309]			growth	43 °C

[Ref.: #1309]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1309]	Sample type/isolated from	thermal sulfur spring
[Ref.: #1309]	Geographic location (country and/or sea, region)	Great Roman Bath at Bath
[Ref.: #1309]	Country	United Kingdom
[Ref.: #1309]	Country ISO 3 Code	GBR
[Ref.: #1309]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Sulfuric	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ459801 (>99% sequence identity) for Thermithiobacillus tepidarius subclade from Microbeatlas

Aquatic Samples	388
Soil Samples	178
Animal Samples	117
Plant Samples	25
Total Samples	708

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1309]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1309]	Thermithiobacillus tepidarius 16S rRNA gene, strain DSM 3134	AJ459801	1475	ENA	929 tax ID
[Ref.: #20218]	Thiobacillus tepidarius 16S rRNA sequence	M79424	708	ENA	929 tax ID	*
[Ref.: #20218]	Thiobacillus tepidarius 16S rRNA sequence	M79425	311	ENA	929 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermithiobacillus tepidarius DSM 3134	GCA_000423825	scaffold	GenBank	1123368 tax ID	*
[Ref.: #66792]	Thermithiobacillus tepidarius DSM 3134	1123368.4	wgs	PATRIC	1123368 tax ID	*
[Ref.: #66792]	Thermithiobacillus tepidarius DSM 3134	2523533554	draft	JGI IMG/M	1123368 tax ID	*

[Ref.: #1309]

GC-content

66.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermithiobacillus tepidarius DSM 3134 DSM 3134 NCBI: GCA_000423825.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermithiobacillus tepidarius DSM 3134 DSM 3134 NCBI: GCA_000423825.1
[Ref.: #69480]	motile	yes	89.729	no
[Ref.: #69480]	flagellated	no	56.834	no
[Ref.: #69480]	gram-positive	no	98.542	no
[Ref.: #69480]	anaerobic	no	96.983	no
[Ref.: #69480]	aerobic	no	73.077	no
[Ref.: #69480]	halophile	no	80.151	no
[Ref.: #69480]	spore-forming	no	94.13	no
[Ref.: #69480]	thermophile	yes	77.066	yes
[Ref.: #69480]	glucose-util	yes	51.444	no
[Ref.: #69480]	glucose-ferment	no	87.699	no

Availability in culture collections External links

[Ref.: #1309]

Culture collection no.

DSM 3134, ATCC 43215

[Ref.: #85754]

SI-ID 93015

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Thermithiobacillus plumbiphilus sp. nov., a sulfur-oxidizing bacterium isolated from lead sulfide.	Watanabe T, Miura A, Shinohara A, Kojima H, Fukui M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000972	2016	*
	Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134(T), a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.	Boden R, Hutt LP, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Woyke T, Kyrpides N	Stand Genomic Sci	10.1186/s40793-016-0188-0	2016	*
	Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134(T), a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.	Boden R, Hutt LP, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Woyke T, Kyrpides N	Stand Genomic Sci	10.1186/s40793-016-0197-z	2016	*

References

#1309

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3134

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85754

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID93015.1 )

* These data were automatically processed and therefore are not curated

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Thermithiobacillus tepidarius DSM 3134 DSM 3134

Thermithiobacillus tepidarius DSM 3134 DSM 3134

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