Name: Calidithermus timidus SPS-243
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16707

Type strain:

Species: Calidithermus timidus

Strain Designation: SPS-243

Culture col. no.: DSM 17022, CIP 108604, LMG 22897, NBRC 103207

Strain history: <- M. da Costa, Univ. Coimbra, Dept. Bioquímica; SPS-243 <- A. Pires

NCBI tax ID(s): 1122223 (strain), 307124 (species)

SI-ID 134623

LMG 22897, CIP 108604, DSM 17022, NBRC 103207

Special Collections

DSMZ
CIP

Section

Calidithermus timidus SPS-243 is a Gram-negative bacterium that was isolated from Biofilm sample from a hot spring.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Calidithermus*
	Species	**Calidithermus timidus**
	Full Scientific Name (LPSN)	Calidithermus timidus (Pires et al. 2005) Raposo et al. 2019

Synonym

Meiothermus timidus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6688]

Culture medium

THERMUS 162 MEDIUM (DSMZ Medium 878)

[Ref.: #6688]

Culture medium growth

[Ref.: #6688]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6688]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6688]			growth	50 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %98

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6688]	Sample type/isolated from	Biofilm sample from a hot spring
[Ref.: #6688]	Geographic location (country and/or sea, region)	São Pedro do Sul
[Ref.: #6688]	Country	Portugal
[Ref.: #6688]	Country ISO 3 Code	PRT
[Ref.: #6688]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Biofilm	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ871168 (>99% sequence identity) for Calidithermus timidus from Microbeatlas

Aquatic Samples	174
Soil Samples	15
Animal Samples	188
Plant Samples	4
Total Samples	381

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6688]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6688]	Meiothermus timidus partial 16S rRNA gene, type strain SPS-243	AJ871168	1483	GenBank ENA	307124 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Calidithermus timidus DSM 17022	GCA_000373205	scaffold	GenBank ENA	1122223 tax ID	*
[Ref.: #66792]	Meiothermus timidus DSM 17022	1122223.3	wgs	PATRIC	1122223 tax ID	*
[Ref.: #66792]	Meiothermus timidus DSM 17022	2515154081	draft	JGI IMG/M	1122223 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Calidithermus timidus DSM 17022 DSM 17022 NCBI: GCA_000373205.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Calidithermus timidus DSM 17022 DSM 17022 NCBI: GCA_000373205.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	67.944	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.881	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.686	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	69.588	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	60.006	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	73.764	no

Availability in culture collections External links

[Ref.: #6688]

Culture collection no.

DSM 17022, CIP 108604, LMG 22897, NBRC 103207

[Ref.: #85726]

SI-ID 134623

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Thermostable Amylosucrase from Calidithermus timidus DSM 17022: Insight into Its Characteristics and Tetrameric Conformation.	Tian Y, Xu W, Guang C, Zhang W, Mu W	J Agric Food Chem	10.1021/acs.jafc.9b04023	2019	*
Phylogeny	Meiothermus roseus sp. nov., a thermophilic bacterium isolated from a geothermal area.	Ming H, Duan YY, Guo QQ, Yin YR, Zhou EM, Liu L, Li S, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0544-x	2015	*
Phylogeny	Meiothermus timidus sp. nov., a new slightly thermophilic yellow-pigmented species.	Pires AL, Albuquerque L, Tiago I, Nobre MF, Empadinhas N, Verissimo A, da Costa MS	FEMS Microbiol Lett	10.1016/j.femsle.2005.02.011	2005	*
	Physiological Properties and Genome Structure of the Hyperthermophilic Filamentous Phage phiOH3 Which Infects Thermus thermophilus HB8.	Nagayoshi Y, Kumagae K, Mori K, Tashiro K, Nakamura A, Fujino Y, Hiromasa Y, Iwamoto T, Kuhara S, Ohshima T, Doi K	Front Microbiol	10.3389/fmicb.2016.00050	2016	*

References

#6688

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17022

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85726

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134623.1 )

* These data were automatically processed and therefore are not curated

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Calidithermus timidus DSM 17022 DSM 17022

Calidithermus timidus DSM 17022 DSM 17022

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