Name: Lacipirellula limnantheis I41
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167060

Type strain:

Species: Lacipirellula limnantheis

Strain Designation: I41, Isolat 41, isolat41

Culture col. no.: LMG 29127, DSM 100603

Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Isolat 41 <- I. Glöckner and A. Stieler

NCBI tax ID(s): 2528024 (species)

SI-ID 397193

DSM 100603

Section

Lacipirellula limnantheis I41 is a mesophilic bacterium that was isolated from surface freshwater samples, collected from a local duck pond.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Lacipirellulaceae*
	Genus	*Lacipirellula*
	Species	**Lacipirellula limnantheis**
	Full Scientific Name (LPSN)	Lacipirellula limnantheis Kallscheuer et al. 2021

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #68451]

Caption:

DSM 100603; scale bar represents 2µm

[Ref.: #68451]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68451]

Culture medium

PLANCTOMYCES MEDIUM (DSMZ Medium 1560)

[Ref.: #68451]

Culture medium growth

[Ref.: #68451]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68451]			growth	28 °C

[Ref.: #68451]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68451]	Sample type/isolated from	surface freshwater samples, collected from a local duck pond
[Ref.: #68451]	Geographic location (country and/or sea, region)	Wolfenbuettel
[Ref.: #68451]	Country	Germany
[Ref.: #68451]	Country ISO 3 Code	DEU
[Ref.: #68451]	Continent	Europe
[Ref.: #68451]	Geographic location	52.1500°/10.5333°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MK554526 (>99% sequence identity) for Lacipirellula limnantheis subclade from Microbeatlas

Aquatic Samples	4921
Soil Samples	8799
Animal Samples	2369
Plant Samples	1815
Total Samples	17904

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Lacipirellula limnantheis strain I41 16S ribosomal RNA gene, partial sequence	MK554526	1532	ENA	2528024 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lacipirellula limnantheis I41	GCA_007746075	chromosome	GenBank	2528024 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lacipirellula limnantheis I41 NCBI: GCA_007746075.1
[Ref.: #69480]	motile	yes	85.611	no
[Ref.: #69480]	flagellated	no	80.668	no
[Ref.: #69480]	gram-positive	no	97.077	no
[Ref.: #69480]	anaerobic	no	96.011	no
[Ref.: #69480]	aerobic	yes	82.246	no
[Ref.: #69480]	halophile	no	85.264	no
[Ref.: #69480]	spore-forming	no	87.045	no
[Ref.: #69480]	glucose-util	yes	91.258	no
[Ref.: #69480]	thermophile	no	92.551	no
[Ref.: #69480]	glucose-ferment	no	90.397	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

LMG 29127, DSM 100603

[Ref.: #114886]

SI-ID 397193

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68451

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100603

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114886

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397193.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lacipirellula limnantheis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF