Name: Syntrophomonas erecta GB4-38
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16687

Type strain:

Species: Syntrophomonas erecta

Strain Designation: GB4-38

Culture col. no.: DSM 16215, CGMCC 1.5013

Strain history: <- CGMCC; CGMCC 1.5013 <- X. Liu and C. Zhang; GB4-38

NCBI tax ID(s): 264446 (species)

SI-ID 138044

CGMCC 1.5013, DSM 16215

Section

Syntrophomonas erecta GB4-38 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from upflow anaerobic sludge blanket reactor for treating bean-curd farm wastewater and lotus field mud.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Syntrophomonas*
	Species	**Syntrophomonas erecta**
	Full Scientific Name (LPSN)	Syntrophomonas erecta Zhang et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31348]	Gram stain	negative

[Ref.: #31348]	Cell length	5 µm

[Ref.: #31348]	Cell width	0.7 µm

[Ref.: #31348]	Cell shape	rod-shaped

[Ref.: #31348]	Motility	yes

[Ref.: #31348]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6331]

Culture medium

SYNTHROPHOMONAS MEDIUM (SULFATE FREE) (DSMZ Medium 213)

[Ref.: #6331]

Culture medium growth

[Ref.: #6331]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6331]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6331]	growth	37 °C
[Ref.: #31348]	growth	25-47 °C
[Ref.: #31348]	optimum	38.5 °C

[Ref.: #6331]	Temperature range	mesophilic
[Ref.: #31348]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31348]			optimum	7.8
[Ref.: #31348]			growth	6.0-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6331]

Oxygen tolerance

anaerobe

[Ref.: #31348]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31348]		NaCl		growth	0-2.9	%

[Ref.: #31348]

Observation

aggregates in chains

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6331]	Sample type/isolated from	upflow anaerobic sludge blanket reactor for treating bean-curd farm wastewater and lotus field mud
[Ref.: #6331]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #6331]	Country	China
[Ref.: #6331]	Country ISO 3 Code	CHN
[Ref.: #6331]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	#Wastewater
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY536889 (>99% sequence identity) for Syntrophomonas erecta subclade from Microbeatlas

Aquatic Samples	99
Soil Samples	48
Animal Samples	55
Plant Samples	17
Total Samples	219

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6331]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6331]	Syntrophomonas erecta strain GB4-38 16S ribosomal RNA gene, complete sequence	AY536889	1561	ENA	264446 tax ID

[Ref.: #6331]

GC-content

43.2 mol%

Availability in culture collections External links

[Ref.: #6331]

Culture collection no.

DSM 16215, CGMCC 1.5013

[Ref.: #85706]

SI-ID 138044

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Syntrophomonas zehnderi sp. nov., an anaerobe that degrades long-chain fatty acids in co-culture with Methanobacterium formicicum.	Sousa DZ, Smidt H, Alves MM, Stams AJM	Int J Syst Evol Microbiol	10.1099/ijs.0.64734-0	2007	*
Phylogeny	Syntrophomonas erecta sp. nov., a novel anaerobe that syntrophically degrades short-chain fatty acids.	Zhang C, Liu X, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.63372-0	2005	*

References

#6331

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16215

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31348

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27662 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85706

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138044.1 )

#27662

IJSEM 799 2005 ( DOI 10.1099/ijs.0.63372-0 , PubMed 15774665 )

* These data were automatically processed and therefore are not curated

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