Mangrovivirga cuniculi (KCTC 72349, JCM 33609, R1DC9)

Name: Mangrovivirga cuniculi (KCTC 72349, JCM 33609, R1DC9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166856

Type strain

Strain Designation R1DC9

Culture col. no. KCTC 72349 JCM 33609 R1DC9 NCCB 100698

NCBI tax ID(s) 2715131

Special Collections JCM KCTC

Links

Mangrovivirga cuniculi R1DC9 is a bacterium of the family Mangrovivirgaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27112

KCTC 72349,JCM 33609,NCCB 100698

@ref 20215

Last LPSN update 2026-05-29 08:46:00

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Mangrovivirgaceae

Genus Mangrovivirga

Species Mangrovivirga cuniculi

Full scientific name Mangrovivirga cuniculi Sefrji et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.483

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		92.5

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM516602v1 assembly for Mangrovivirga cuniculi R1DC9	complete	GCA_005166025	1267423.13	3000239007	2715131	94.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Mangrovivirga cuniculi strain R1DC9 16S ribosomal RNA gene, partial sequence	MT146883	1519		2715131

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM516602v1 assembly for Mangrovivirga cuniculi R1DC9
NCBI: GCA_005166025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	no	68.03	no
125439	gram_stain	BacteriaNetⓘ	negative	88.96	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.81	no
125439	spore_formation	BacteriaNetⓘ	no	92.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mangrovivirga cuniculi R1DC9
NCBI: GCA_005166025.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.48	no
125438	anaerobic	anaerobicⓘ	no	91.71	no
125438	aerobic	aerobicⓘ	yes	87.78	no
125438	spore-forming	spore-formingⓘ	no	85.49	no
125438	thermophilic	thermophileⓘ	no	95.30	no
125438	flagellated	motile2+ⓘ	no	86.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mangrovivirga cuniculi gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family Mangrovivirgaceae fam. nov.	Sefrji FO, Michoud G, Marasco R, Merlino G, Daffonchio D	Int J Syst Evol Microbiol	10.1099/ijsem.0.004866	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mangrovivirga cuniculi (KCTC 72349, JCM 33609, R1DC9)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_005166025

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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