Name: Desulfoglaeba alkanexedens ALDC
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16678

Type strain:

Species: Desulfoglaeba alkanexedens

Strain Designation: ALDC

Culture col. no.: DSM 18185, ATCC BAA-1302, JCM 13588

Strain history: J. M. Suflita and I. A. Davidova strain ALDC.

NCBI tax ID(s): 361111 (species)

SI-ID 297175

ATCC BAA-1302, JCM 13588, DSM 18185

Section

Desulfoglaeba alkanexedens ALDC is an anaerobe, mesophilic bacterium that was isolated from oily sludge from naval wastewater-storage facility.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Syntrophobacterales*
	Family	*Syntrophobacteraceae*
	Genus	*Desulfoglaeba*
	Species	**Desulfoglaeba alkanexedens**
	Full Scientific Name (LPSN)	Desulfoglaeba alkanexedens Davidova et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #7416]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7416]

Culture medium

DESULFOGLAEBA MEDIUM (DSMZ Medium 1074)

[Ref.: #7416]

Culture medium growth

[Ref.: #7416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7416]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7416]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #7416]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7416]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7416]	Sample type/isolated from	oily sludge from naval wastewater-storage facility
[Ref.: #7416]	Geographic location (country and/or sea, region)	Virginia, Portsmouth
[Ref.: #7416]	Country	USA
[Ref.: #7416]	Country ISO 3 Code	USA
[Ref.: #7416]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Naval oily wastewater-storage facility
[Ref.: #67770]	Geographic location (country and/or sea, region)	VA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ303457 (>99% sequence identity) for Desulfoglaeba alkanexedens subclade from Microbeatlas

Aquatic Samples	298
Soil Samples	46
Animal Samples	65
Plant Samples	7
Total Samples	416

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7416]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7416]	Desulfoglaeba alkanexedens strain ALDC 16S ribosomal RNA gene, partial sequence	DQ303457	1495	ENA	980445 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfoglaeba alkanexedens ALDC	GCA_005377625	complete	GenBank	980445 tax ID	*
[Ref.: #66792]	Desulfoglaeba alkanexedens ALDC	980445.7	complete	PATRIC	980445 tax ID	*
[Ref.: #66792]	Desulfoglaeba alkanexedens ALDC	2636416042	draft	JGI IMG/M	980445 tax ID	*

[Ref.: #7416]	GC-content	53.6 mol%
[Ref.: #67770]	GC-content	53.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfoglaeba alkanexedens ALDC ALDC NCBI: GCA_005377625.1
[Ref.: #69480]	motile	yes	84.298	no
[Ref.: #69480]	flagellated	no	85.448	no
[Ref.: #69480]	gram-positive	no	99.615	no
[Ref.: #69480]	anaerobic	yes	99.999	yes
[Ref.: #69480]	aerobic	no	99.148	yes
[Ref.: #69480]	halophile	no	78.401	no
[Ref.: #69480]	spore-forming	no	90.16	no
[Ref.: #69480]	glucose-util	yes	54.155	no
[Ref.: #69480]	thermophile	yes	82.703	yes
[Ref.: #69480]	glucose-ferment	no	77.242	no

Availability in culture collections External links

[Ref.: #7416]

Culture collection no.

DSM 18185, ATCC BAA-1302, JCM 13588

[Ref.: #85698]

SI-ID 297175

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfoglaeba alkanexedens gen. nov., sp. nov., an n-alkane-degrading, sulfate-reducing bacterium.	Davidova IA, Duncan KE, Choi OK, Suflita JM	Int J Syst Evol Microbiol	10.1099/ijs.0.64398-0	2006	*

References

#7416

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18185

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85698

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297175.1 )

* These data were automatically processed and therefore are not curated

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Desulfoglaeba alkanexedens ALDC ALDC

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