Vagococcus coleopterorum (also known as KACC 21344, KCTC 43112, or JCM 33682)

Name: Vagococcus coleopterorum (also known as KACC 21344, KCTC 43112, or JCM 33682)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166761

Type strain

Strain Designation also known as KACC 21344, or JCM 33682, HDW17A

Culture col. no. also known as KACC 21344 KCTC 43112 or JCM 33682 HDW17A KACC 21344 1 more

NCBI tax ID(s) 2714946

Special Collections JCM KCTC

Links

Vagococcus coleopterorum also known as KACC 21344 is a prokaryote of the family Enterococcaceae.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 26220

KCTC 43112,JCM 33682

@ref 20215

Last LPSN update 2025-12-16 10:09:56

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Vagococcus

Species Vagococcus coleopterorum

Full scientific name Vagococcus coleopterorum Hyun et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.521

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	93.6

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1130395v1 assembly for Vagococcus coleopterorum HDW17A	complete	GCA_011303955	2714946.3	2873584433	2714946	90.48

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Vagococcus coleopterorum strain HDW17A 16S ribosomal RNA gene, partial sequence	MN099419	1481		2714946

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vagococcus coleopterorum HDW17A
NCBI: GCA_011303955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	63.10	no
125439	motility	BacteriaNetⓘ	yes	57.80	no
125439	gram_stain	BacteriaNetⓘ	positive	73.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	93.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vagococcus coleopterorum HDW17A
NCBI: GCA_011303955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.52	no
125438	anaerobic	anaerobicⓘ	no	87.92	no
125438	aerobic	aerobicⓘ	no	96.13	no
125438	spore-forming	spore-formingⓘ	no	85.21	no
125438	thermophilic	thermophileⓘ	no	92.00	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus, and emended description of the genus Vagococcus.	Hyun DW, Tak EJ, Kim PS, Bae JW	J Microbiol	10.1007/s12275-021-0485-1	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Vagococcus coleopterorum (also known as KACC 21344, KCTC 43112, or JCM 33682)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_011303955

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media