Name: Syntrophobacterium sulfatireducens TB8106
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16671

Type strain:

Species: Syntrophobacterium sulfatireducens

Strain Designation: TB8106

Culture col. no.: DSM 16706, AS 1.5016, CGMCC 1.5016

Strain history: <- X. Dong, State Key Lab. Microbial Resources, Inst. Microbiol., Chinese Academy of Sciences, Beijing; TB8106 <- S. Chen {2004}

NCBI tax ID(s): 283702 (species)

SI-ID 139013

AS 1.5016, DSM 16706, CGMCC 1.5016

Section

Syntrophobacterium sulfatireducens TB8106 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sludge of UASB reactor.

Gram-negative
ovoid-shaped
anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Syntrophobacterales*
	Family	*Syntrophobacteraceae*
	Genus	*Syntrophobacterium*
	Species	**Syntrophobacterium sulfatireducens**
	Full Scientific Name (LPSN)	Syntrophobacterium sulfatireducens (Chen et al. 2005) Galushko and Kuever 2021

Synonym

Syntrophobacter sulfatireducens

Information on morphological and physiological properties Morphology

[Ref.: #31441]	Gram stain	negative

[Ref.: #31441]	Cell length	2 µm

[Ref.: #31441]	Cell width	1.15 µm

[Ref.: #31441]	Cell shape	ovoid-shaped

[Ref.: #31441]	Motility	no

[Ref.: #6483]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6483]

Culture medium

SYNTHROPHOMONAS MEDIUM (DSMZ Medium 212)

[Ref.: #6483]

Culture medium growth

[Ref.: #6483]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6483]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6483]	growth	37 °C
[Ref.: #31441]	growth	37 °C
[Ref.: #31441]	optimum	20-48 °C

[Ref.: #6483]	Temperature range	mesophilic
[Ref.: #31441]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31441]			optimum	7.3
[Ref.: #31441]			growth	6.2-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6483]	Oxygen tolerance	anaerobe
[Ref.: #31441]	Oxygen tolerance	anaerobe

[Ref.: #31441]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31441]		NaCl		growth	<0.58	%
[Ref.: #31441]		NaCl		optimum	0.29	%

[Ref.: #31441]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31441]		propionate ChEBI	+	carbon source
[Ref.: #31441]		pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6483]	Sample type/isolated from	sludge of UASB reactor
[Ref.: #6483]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #6483]	Country	China
[Ref.: #6483]	Country ISO 3 Code	CHN
[Ref.: #6483]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Anaerobic digestor
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY651787 (>99% sequence identity) for Syntrophobacter sulfatireducens subclade from Microbeatlas

Aquatic Samples	1585
Soil Samples	165
Animal Samples	115
Plant Samples	85
Total Samples	1950

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6483]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6483]	Syntrophobacter sulfatireducens strain TB8106 16S ribosomal RNA gene, complete sequence	AY651787	1554	ENA	283702 tax ID

[Ref.: #6483]	GC-content	59 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31441]	GC-content	58.5 mol%

Availability in culture collections External links

[Ref.: #6483]

Culture collection no.

DSM 16706, AS 1.5016, CGMCC 1.5016

[Ref.: #85692]

SI-ID 139013

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfoferrobacter suflitae gen. nov., sp. nov., a novel sulphate-reducing bacterium in the Deltaproteobacteria capable of autotrophic growth with hydrogen or elemental iron.	Davidova IA, Duncan KE, Wiley G, Najar FZ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005483	2022	*
Phylogeny	Syntrophobacter sulfatireducens sp. nov., a novel syntrophic, propionate-oxidizing bacterium isolated from UASB reactors.	Chen S, Liu X, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.63565-0	2005	*

References

#6483

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16706

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31441

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27745 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85692

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID139013.1 )

#27745

IJSEM 1319 2005 ( DOI 10.1099/ijs.0.63565-0 , PubMed 15879275 )

* These data were automatically processed and therefore are not curated

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