Vagococcus hydrophili (KCTC 43113, or JCM 33683, also known as KACC 21345)

Name: Vagococcus hydrophili (KCTC 43113, or JCM 33683, also known as KACC 21345)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166679

Type strain

Strain Designation or JCM 33683, also known as KACC 21345, HDW17B

Culture col. no. KCTC 43113 or JCM 33683 also known as KACC 21345 HDW17B JCM 33683 1 more

NCBI tax ID(s) 2714947

Special Collections JCM KCTC

Links

Vagococcus hydrophili or JCM 33683 is a bacterium of the family Enterococcaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 25117

KCTC 43113,JCM 33683

@ref 20215

Last LPSN update 2026-02-09 11:40:23

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Vagococcus

Species Vagococcus hydrophili

Full scientific name Vagococcus hydrophili Hyun et al. 2022

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	95

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1130419v1 assembly for Vagococcus hydrophili HDW17B	complete	GCA_011304195	2714947.3	2873581347	2714947	93.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Vagococcus hydrophili strain HDW17B 16S ribosomal RNA gene, partial sequence	MN099420	1483		2714947

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vagococcus hydrophili HDW17B
NCBI: GCA_011304195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	63.70	no
125439	motility	BacteriaNetⓘ	no	58.10	no
125439	gram_stain	BacteriaNetⓘ	positive	80.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	95.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vagococcus hydrophili HDW17B
NCBI: GCA_011304195.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.88	no
125438	anaerobic	anaerobicⓘ	no	86.41	no
125438	aerobic	aerobicⓘ	no	87.95	no
125438	spore-forming	spore-formingⓘ	no	64.40	no
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	yes	58.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus, and emended description of the genus Vagococcus.	Hyun DW, Tak EJ, Kim PS, Bae JW	J Microbiol	10.1007/s12275-021-0485-1	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vagococcus hydrophili (KCTC 43113, or JCM 33683, also known as KACC 21345)

Name and taxonomic classification

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_011304195

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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