Name: Thermus caldilimi YIM 78456
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166575

Type strain:

Species: Thermus caldilimi

Strain Designation: YIM 78456

Culture col. no.: KCTC 52948, NBRC 113036

NCBI tax ID(s): 2483360 (species)

Thermus caldilimi YIM 78456 is a bacterium of the family Thermaceae.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus caldilimi**
	Full Scientific Name (LPSN)	Thermus caldilimi Li et al. 2021

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Thermus caldilimi 16S ribosomal RNA gene, partial sequence	MK681861	1456	ENA	2483360 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermus caldilimi YIM 78456	GCA_004684245	complete	GenBank	2483360 tax ID	*
[Ref.: #66792]	Thermus sp. YIM 78456	2483360.3	complete	PATRIC	2483360 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus caldilimi YIM 78456 NCBI: GCA_004684245.1
[Ref.: #69480]	flagellated	no	98.154	no
[Ref.: #69480]	gram-positive	no	95.725	no
[Ref.: #69480]	anaerobic	no	96.723	no
[Ref.: #69480]	aerobic	yes	76.03	no
[Ref.: #69480]	halophile	no	84.618	no
[Ref.: #69480]	spore-forming	no	93.79	no
[Ref.: #69480]	glucose-util	yes	89.98	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	motile	no	90.811	no
[Ref.: #69480]	glucose-ferment	no	82.868	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

KCTC 52948, NBRC 113036

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermus caldilimi sp. nov., a thermophilic bacterium isolated from a geothermal area.	Li MM, Xian WD, Zhang XT, Yin YR, Zhou EM, Ding YP, Liu L, Fang BZ, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01309-0	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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