Clostridium manihotivorum (CT4, NBRC 114534, TBRC 11758)

Name: Clostridium manihotivorum (CT4, NBRC 114534, TBRC 11758)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166557

Type strain

Strain Designation CT4

Culture col. no. CT4 NBRC 114534 TBRC 11758

NCBI tax ID(s) 2320868

Links

Clostridium manihotivorum CT4 is a bacterium of the family Clostridiaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 287922

TBRC 11758,NBRC 114534

@ref 20215

Last LPSN update 2026-05-29 08:45:55

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium manihotivorum

Full scientific name Clostridium manihotivorum Cheawchanlertfa et al. 2021

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	97.867

Spore formation

@ref	Spore formation	Confidence
125439		94.062

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM401518v1 assembly for Clostridium manihotivorum CT4	complete	GCA_004015185	2320868.3	2859883733	2320868	93.82

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Clostridium manihotivorum strain CT4 16S ribosomal RNA gene, partial sequence	MH879026	1520		2320868

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM401518v1 assembly for Clostridium manihotivorum CT4
NCBI: GCA_004015185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	yes	85.03	no
125439	gram_stain	BacteriaNetⓘ	positive	54.11	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.87	no
125439	spore_formation	BacteriaNetⓘ	yes	94.06	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium manihotivorum CT4
NCBI: GCA_004015185.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	64.59	no
125438	anaerobic	anaerobicⓘ	yes	80.93	no
125438	aerobic	aerobicⓘ	no	87.88	no
125438	spore-forming	spore-formingⓘ	yes	78.97	no
125438	thermophilic	thermophileⓘ	no	86.75	no
125438	flagellated	motile2+ⓘ	yes	78.76	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Biotransformation of Tetrabromobisphenol A and Its Analogs by Selected Gut Bacteria Strains: Implications for Human Health.	Lv M, Liu Y, Wang M, Wang Y, Xiang T, Guo Y, Song XC, Yan Y, Gao J, Shi C, Pan W, Liu A, Yao L, Yan X, Chen L, Liu R, Shi J, Yan B, Cai Z, Qu G, Jiang G.	Environ Sci Technol	10.1021/acs.est.4c10434	2024
	A novel amylolytic/xylanolytic/cellulolytic multienzyme complex from Clostridium manihotivorum that hydrolyzes polysaccharides in cassava pulp.	Cheawchanlertfa P, Tongsuk P, Sutheeworapong S, Waeonukul R, Pason P, Poomputsa K, Ratanakhanokchai K, Kosugi A, Tachaapaikoon C.	Appl Microbiol Biotechnol	10.1007/s00253-021-11521-6	2021
	Clostridium folliculivorans sp. nov., isolated from soil samples of an organic paddy in Japan.	Tazawa J, Kobayashi H, Tanizawa Y, Uchino A, Tanaka F, Urashima Y, Miura S, Sakamoto M, Ohkuma M, Tohno M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005876	2023
Phylogeny	Clostridium manihotivorum sp. nov., a novel mesophilic anaerobic bacterium that produces cassava pulp-degrading enzymes.	Cheawchanlertfa P, Sutheeworapong S, Jenjaroenpun P, Wongsurawat T, Nookaew I, Cheevadhanarak S, Kosugi A, Pason P, Waeonukul R, Ratanakhanokchai K, Tachaapaikoon C	PeerJ	10.7717/peerj.10343	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium manihotivorum (CT4, NBRC 114534, TBRC 11758)

Name and taxonomic classification

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004015185

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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