Name: Metallosphaera hakonensis HO1-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16646

Type strain:

Species: Metallosphaera hakonensis

Strain Designation: HO1-1

Culture col. no.: DSM 7519, JCM 8857, ATCC 51241, IAM 14250

Strain history: S. Takayanagi HO 1-1.

NCBI tax ID(s): 1293036 (strain), 79601 (species)

SI-ID 42873

ATCC 51241, DSM 7519, IAM 14250, JCM 8857

Special Collections

DSMZ
JCM

Section

Metallosphaera hakonensis HO1-1 is a spore-forming, Gram-negative archaeon that was isolated from hot spring.

Gram-negative
spore-forming
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Sulfolobales*
	Family	*Sulfolobaceae*
	Genus	*Metallosphaera*
	Species	**Metallosphaera hakonensis**
	Full Scientific Name (LPSN)	Metallosphaera hakonensis (Takayanagi et al. 1996) Kurosawa et al. 2003

Synonym

Sulfolobus hakonensis

Information on morphological and physiological properties Morphology

[Ref.: #3197]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3197]

Culture medium

SULFOLOBUS MEDIUM (DSMZ Medium 88)

[Ref.: #3197]

Culture medium growth

[Ref.: #3197]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3197]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3197]			growth	65 °C
[Ref.: #67770]			growth	70 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3197]	Sample type/isolated from	hot spring
[Ref.: #3197]	Geographic location (country and/or sea, region)	Kanagawa, Ohwakudani area, Hakone Natl. Park
[Ref.: #3197]	Country	Japan
[Ref.: #3197]	Country ISO 3 Code	JPN
[Ref.: #3197]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Lava field at Owakudani
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hakone
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D86414 (>99% sequence identity) for Metallosphaera hakonensis subclade from Microbeatlas

Aquatic Samples	7
Soil Samples
Animal Samples
Plant Samples
Total Samples	7

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3197]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3197]	Sulfolobus sp. H 16S rRNA	D14052	1446	GenBank ENA	359275 tax ID
[Ref.: #20218]	Metallosphaera hakonensis gene for 16S rRNA, partial sequence	D86414	1461	GenBank ENA	79601 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Metallosphaera hakonensis JCM 8857 = DSM 7519 HO1-1	GCA_003201675	complete	GenBank ENA	1293036 tax ID	*
[Ref.: #66792]	Metallosphaera hakonensis JCM 8857 = DSM 7519	GCA_001315825	contig	GenBank ENA	1293036 tax ID	*
[Ref.: #66792]	Metallosphaera hakonensis JCM 8857	2681813025	draft	JGI IMG/M	1293036 tax ID	*
[Ref.: #66792]	Metallosphaera hakonensis strain HO1-1	79601.6	complete	PATRIC	79601 tax ID	*
[Ref.: #66792]	Metallosphaera hakonensis JCM 8857	1293036.3	wgs	PATRIC	1293036 tax ID	*

[Ref.: #3197]	GC-content	46.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	38.4 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Metallosphaera hakonensis JCM 8857 = DSM 7519 HO1-1 NCBI: GCA_003201675.2
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Metallosphaera hakonensis JCM 8857 = DSM 7519 HO1-1 NCBI: GCA_003201675.2
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	75.073	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	65.645	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	59.414	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.301	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	78.684	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #3197]

Culture collection no.

DSM 7519, JCM 8857, ATCC 51241, IAM 14250

[Ref.: #85667]

SI-ID 42873

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Metallosphaera cuprina sp. nov., an acidothermophilic, metal-mobilizing archaeon.	Liu LJ, You XY, Guo X, Liu SJ, Jiang CY	Int J Syst Evol Microbiol	10.1099/ijs.0.026591-0	2010	*
Phylogeny	Reclassification of Sulfolobus hakonensis Takayanagi et al. 1996 as Metallosphaera hakonensis comb. nov. based on phylogenetic evidence and DNA G+C content.	Kurosawa N, Itoh YH, Itoh T	Int J Syst Evol Microbiol	10.1099/ijs.0.02716-0	2003	*

References

#3197

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7519

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85667

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42873.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Metallosphaera hakonensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Metallosphaera hakonensis JCM 8857 = DSM 7519 HO1-1

Metallosphaera hakonensis JCM 8857 = DSM 7519 HO1-1

Change proposal

Change proposal