Name: Pararhodobacter oceanensis AM505
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166450

Type strain:

Species: Pararhodobacter oceanensis

Strain Designation: AM505

Culture col. no.: KCTC 62407, MCCC 1H00289

NCBI tax ID(s): 2172121 (species)

Section

Pararhodobacter oceanensis AM505 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine intertidal sediment sample.

colony-forming
Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Pararhodobacter*
	Species	**Pararhodobacter oceanensis**
	Full Scientific Name (LPSN)	Pararhodobacter oceanensis Wang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67832]	Gram stain	negative

[Ref.: #67832]	Cell length	1.3-3.3 µm

[Ref.: #67832]	Cell width	0.4-0.8 µm

[Ref.: #67832]	Cell shape	rod-shaped

[Ref.: #67832]	Motility	no

[Ref.: #67832]	Colony size	1 mm
[Ref.: #67832]	Colony color	brownish
[Ref.: #67832]	Colony shape	circular
[Ref.: #67832]	Incubation period	3 days
[Ref.: #67832]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67832]			growth	4-40 °C
[Ref.: #67832]			optimum	28-33 °C

[Ref.: #67832]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #67832]			optimum	7.5-8
[Ref.: #67832]			growth	6.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67832]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67832]		NaCl		growth	0.5-9	%(w/v)
[Ref.: #67832]		NaCl		optimum	2-4	%(w/v)

[Ref.: #67832]

Observation

Cells are non-phototrophic.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67832]	(S)-lactate ChEBI	+	carbon source
[Ref.: #67832]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #67832]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #67832]	acetate ChEBI	+	carbon source
[Ref.: #67832]	acetoacetate ChEBI	+	carbon source
[Ref.: #67832]	casein	-	hydrolysis
[Ref.: #67832]	cellulose ChEBI	-	hydrolysis
[Ref.: #67832]	citrate ChEBI	+	assimilation
[Ref.: #67832]	citrate ChEBI	+	carbon source
[Ref.: #67832]	D-aspartate ChEBI	+	carbon source
[Ref.: #67832]	D-fructose ChEBI	+	carbon source
[Ref.: #67832]	D-fructose ChEBI	-	builds acid from
[Ref.: #67832]	D-fucose ChEBI	-	builds acid from
[Ref.: #67832]	D-glucose ChEBI	-	builds acid from
[Ref.: #67832]	D-malate ChEBI	+	carbon source
[Ref.: #67832]	D-mannitol ChEBI	+	carbon source
[Ref.: #67832]	D-ribose ChEBI	-	builds acid from
[Ref.: #67832]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #67832]	D-xylose ChEBI	+	builds acid from
[Ref.: #67832]	glycerol ChEBI	+	carbon source
[Ref.: #67832]	inosine ChEBI	+	carbon source
[Ref.: #67832]	L-alanine ChEBI	+	carbon source
[Ref.: #67832]	L-arginine ChEBI	+	carbon source
[Ref.: #67832]	L-aspartate ChEBI	+	carbon source
[Ref.: #67832]	L-glutamate ChEBI	+	carbon source
[Ref.: #67832]	L-histidine ChEBI	+	carbon source
[Ref.: #67832]	L-malate ChEBI	+	carbon source
[Ref.: #67832]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #67832]	nitrate ChEBI	-	reduction
[Ref.: #67832]	sodium alginate ChEBI	-	hydrolysis
[Ref.: #67832]	starch ChEBI	-	hydrolysis
[Ref.: #67832]	tween 20 ChEBI	-	hydrolysis
[Ref.: #67832]	tween 40 ChEBI	-	hydrolysis
[Ref.: #67832]	tween 60 ChEBI	-	hydrolysis
[Ref.: #67832]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #67832]	cefotaxime sodium ChEBI	yes	30	µg (disc)
[Ref.: #67832]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #67832]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #67832]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #67832]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #67832]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #67832]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #67832]	norfloxacin ChEBI				yes	30	µg (disc)
[Ref.: #67832]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #67832]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #67832]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #67832]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #67832]	acid phosphatase	+	3.1.3.2
[Ref.: #67832]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67832]	catalase	+	1.11.1.6
[Ref.: #67832]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67832]	esterase (C 4)	+
[Ref.: #67832]	esterase Lipase (C 8)	+
[Ref.: #67832]	gelatinase	-
[Ref.: #67832]	leucine arylamidase	-	3.4.11.1
[Ref.: #67832]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67832]	tryptophan deaminase	+	4.1.99.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67832]

Fatty acid	Percentage
C18:1 w7c and/or C18:1 w6c	53.7
11-methyl C18:1w7c	21.8
C18:0	12.9
C16:0	3.6
C8:0 3OH	2.3
C10:0 3OH	1.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67832]	Sample type/isolated from	marine intertidal sediment sample
[Ref.: #67832]	Geographic location (country and/or sea, region)	Shuangdao Bay, Weihai
[Ref.: #67832]	Country	China
[Ref.: #67832]	Country ISO 3 Code	CHN
[Ref.: #67832]	Continent	Asia
[Ref.: #67832]	Geographic location	37.4604°/121.9670°
[Ref.: #67832]	Enrichment culture	marine agar 2216
[Ref.: #67832]	Enrichment culture duration	5 days
[Ref.: #67832]	Enrichment culture temperature	28 ̊C
[Ref.: #67832]	Isolation/enrichment procedure	serially diluted to 10-4 with sterilized seawater and 0.1 ml aliquots of each dilution were spread onto marine agar 2216 for 5 days at 28°C.
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67832]	Pararhodobacter oceanensis 16S ribosomal RNA gene, partial sequence	KY009733	1456	ENA	2172121 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67832]	Pararhodobacter oceanensis AM505	GCA_003076755	contig	GenBank	2172121 tax ID
[Ref.: #66792]	Pararhodobacter oceanensis AM505	2834139714	draft	JGI IMG/M	2172121 tax ID	*

[Ref.: #67832]

GC-content

63 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67832]

Culture collection no.

KCTC 62407, MCCC 1H00289

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pararhodobacter oceanensis sp. nov., isolated from marine intertidal sediment and emended description of the genus Pararhodobacter.	Wang XL, Zhao YN, Wang K, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003255	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67832

Xiao-Lin Wang, Ya-Nan Zhao, Kan Wang, Zong-Jun Du: Pararhodobacter oceanensis sp. nov., isolated from marine intertidal sediment and emended description of the genus Pararhodobacter. IJSEM 69: 866 - 870 2019 ( DOI 10.1099/ijsem.0.003255 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pararhodobacter oceanensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF