Name: Rubinisphaera italica Pan54
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166400

Type strain:

Species: Rubinisphaera italica

Strain Designation: Pan54

Culture col. no.: DSM 29369, LMG 29789

Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; pan54 <- A. Stieler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany;

NCBI tax ID(s): 2527969 (species)

SI-ID 403728

DSM 29369

Section

Rubinisphaera italica Pan54 is an other bacterium that was isolated from algal surface at a hydrothermal area.

other
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Planctomycetales*
	Family	*Planctomycetaceae*
	Genus	*Rubinisphaera*
	Species	**Rubinisphaera italica**
	Full Scientific Name (LPSN)	Rubinisphaera italica Kallscheuer et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.806

[Ref.: #68333]	Cell length	1.4-1.8 µm

[Ref.: #68333]	Cell width	0.7-0.9 µm

[Ref.: #68333]	Cell shape	other

[Ref.: #68333]

Colony color

white

[Ref.: #68333]

Pigment production

Multimedia content

[Ref.: #69057]

Caption:

DSM 29369, scale bar represents 2 µm

[Ref.: #69057]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69057]

Culture medium

PLANCTOMYCES MEDIUM (DSMZ Medium 1560)

[Ref.: #69057]

Culture medium growth

[Ref.: #69057]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #68333]	growth	14-27 °C
[Ref.: #68333]	optimum	26 °C
[Ref.: #69057]	growth	20 °C

[Ref.: #68333]	Temperature range	mesophilic
[Ref.: #69057]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #68333]			optimum	9
[Ref.: #68333]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.959
[Ref.: #69481]	Ability of spore formation	no Confidence in %93

[Ref.: #68333]

Observation

form aggregates and divide by polar budding

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68333]

Fatty acid	Percentage
C16:1 w7c/C15:0 ISO 2OH	56.53
C16:0	35.82
C18:1 w7c	4.73
C18:1 w9c	1.22
C18:0	0.37
C15:0	0.26
C14:0	0.21
C16:1 w5c	0.21
C17:1 w8c	0.15
C15:1 w6c	0.13
C20:1 w7c	0.11
C17:0	0.1
C14:1 w5c	0.1
C12:0 3OH	0.06

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68333]	Sample type/isolated from	algal surface at a hydrothermal area
[Ref.: #68333]	Geographic location (country and/or sea, region)	Panarea
[Ref.: #68333]	Country	Italy
[Ref.: #68333]	Country ISO 3 Code	ITA
[Ref.: #68333]	Continent	Europe
[Ref.: #68333]	Geographic location	38.6392°/15.1051°
[Ref.: #68333]	Enrichment culture	M1H NAG ASW medium
[Ref.: #68333]	Enrichment culture duration	2-3 weeks
[Ref.: #68333]	Enrichment culture temperature	20 ̊C
[Ref.: #68333]	Isolation date	2013-09-10

[Ref.: #69057]	Sample type/isolated from	algal surface
[Ref.: #69057]	Geographic location (country and/or sea, region)	hydrothermal area 26 close to Panaera in the north of Sicily
[Ref.: #69057]	Country	Italy
[Ref.: #69057]	Country ISO 3 Code	ITA
[Ref.: #69057]	Continent	Europe
[Ref.: #69057]	Geographic location	38.6392°/15.1051°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68333]	Rubinisphaera italica 16S ribosomal RNA gene, partial sequence	MK554545	1500	ENA	2527969 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68333]	Rubinisphaera italica Pan54	GCA_007859715	scaffold	GenBank	2527969 tax ID
[Ref.: #66792]	Rubinisphaera italica Pan54	2887510965	draft	JGI IMG/M	2527969 tax ID	*

[Ref.: #68333]	GC-content	48.8 mol%	genome sequence analysis
[Ref.: #69057]	GC-content	48.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rubinisphaera italica Pan54 NCBI: GCA_007859715.1
[Ref.: #69481]	spore-forming	no	93	no

Availability in culture collections External links

[Ref.: #68333]

Culture collection no.

DSM 29369, LMG 29789

[Ref.: #114786]

SI-ID 403728

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rubinisphaera margarita sp. nov., a novel planctomycete isolated from marine sediments collected in the Portuguese north coast.	Vitorino IR, Lobo-da-Cunha A, Vasconcelos V, Lage OM	Int J Syst Evol Microbiol	10.1099/ijsem.0.005425	2022	*
Phylogeny	Rubinisphaera italica sp. nov. isolated from a hydrothermal area in the Tyrrhenian Sea close to the volcanic island Panarea.	Kallscheuer N, Jogler M, Wiegand S, Peeters SH, Heuer A, Boedeker C, Jetten MSM, Rohde M, Jogler C	Antonie Van Leeuwenhoek	10.1007/s10482-019-01329-w	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68333

Nicolai Kallscheuer, Mareike Jogler, Sandra Wiegand, Stijn H. Peeters, Anja Heuer, Christian Boedeker, Mike S. M. Jetten, Manfred Rohde & Christian Jogler: Rubinisphaera italica sp. nov. isolated from a hydrothermal area in the Tyrrhenian Sea close to the volcanic island Panarea. Antonie Van Leeuwenhoek 113: 1727 - 1736 2020 ( DOI 10.1007/s10482-019-01329-w )

#69057

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29369

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114786

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403728.1 )

* These data were automatically processed and therefore are not curated

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