Name: Rubripirellula reticaptiva Poly59
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166397

Type strain:

Species: Rubripirellula reticaptiva

Strain Designation: Poly59

Culture col. no.: DSM 103767, LMG 29696

Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Poly59 {2016} <- A. Heuer, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; {2016}

NCBI tax ID(s): 2528013 (species)

SI-ID 406015

DSM 103767

Section

Rubripirellula reticaptiva Poly59 is a Gram-negative, coccus-shaped bacterium that was isolated from polyethylene pellets , incubated in brackish water, close to a wastewater treatment plant, 2m depth for 14 days.

coccus-shaped
Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Pirellulaceae*
	Genus	*Rubripirellula*
	Species	**Rubripirellula reticaptiva**
	Full Scientific Name (LPSN)	Rubripirellula reticaptiva Kallscheuer et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #68089]	Gram stain	negative

[Ref.: #68089]	Cell length	1.2-1.8 µm

[Ref.: #68089]	Cell width	0.8-1.2 µm

[Ref.: #68089]	Cell shape	coccus-shaped

[Ref.: #68089]

Colony color

red

Multimedia content

[Ref.: #69075]

Caption:

DSM 103767, scale bar represtens 5 µm

[Ref.: #69075]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69075]

Culture medium

PLANCTOMYCES MEDIUM (DSMZ Medium 1560)

[Ref.: #69075]

Culture medium growth

[Ref.: #69075]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #68089]	growth	10-33 °C
[Ref.: #68089]	optimum	24 °C
[Ref.: #69075]	growth	24 °C

[Ref.: #68089]	Temperature range	psychrophilic
[Ref.: #69075]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #68089]			optimum	7.5-8.0
[Ref.: #68089]			growth	6.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68089]

Observation

form aggregates and divide by polar budding

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68089]	Sample type/isolated from	polyethylene (PE) pellets (ExxonMobil HDPE HTA 108, diameter 3 mm), incubated in brackish water, close to a wastewater treatment plant, 2m depth for 14 days
[Ref.: #68089]	Sampling date	2014-09-04
[Ref.: #68089]	Geographic location (country and/or sea, region)	Rostock
[Ref.: #68089]	Country	Germany
[Ref.: #68089]	Country ISO 3 Code	DEU
[Ref.: #68089]	Continent	Europe
[Ref.: #68089]	Geographic location	54.1060°/12.0960°

[Ref.: #69075]	Sample type/isolated from	polystyrene and PE particles, stored in separate incubators in the water for 14 day in 2 m depth
[Ref.: #69075]	Geographic location (country and/or sea, region)	Heiligendamm
[Ref.: #69075]	Country	Germany
[Ref.: #69075]	Country ISO 3 Code	DEU
[Ref.: #69075]	Continent	Europe
[Ref.: #69075]	Geographic location	54.1460°/11.8430°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68089]	Rubripirellula reticaptiva 16S ribosomal RNA gene, partial sequence	MK554553	1535	ENA	2528013 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68089]	Rubripirellula reticaptiva Poly59	GCA_007860175	scaffold	GenBank	2528013 tax ID
[Ref.: #66792]	Rubripirellula reticaptiva Poly59	2887592959	draft	JGI IMG/M	2528013 tax ID	*

[Ref.: #68089]	GC-content	54.8 mol%	genome sequence analysis
[Ref.: #69075]	GC-content	54.8 mol%

Availability in culture collections External links

[Ref.: #68089]

Culture collection no.

DSM 103767, LMG 29696

[Ref.: #114783]

SI-ID 406015

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Three novel Rubripirellula species isolated from plastic particles submerged in the Baltic Sea and the estuary of the river Warnow in northern Germany.	Kallscheuer N, Jogler M, Wiegand S, Peeters SH, Heuer A, Boedeker C, Jetten MSM, Rohde M, Jogler C	Antonie Van Leeuwenhoek	10.1007/s10482-019-01368-3	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68089

Nicolai Kallscheuer, Mareike Jogler, Sandra Wiegand, Stijn H. Peeters, Anja Heuer, Christian Boedeker, Mike S. M. Jetten, Manfred Rohde, Christian Jogler: Three novel Rubripirellula species isolated from plastic particles submerged in the Baltic Sea and the estuary of the river Warnow in northern Germany. Antonie Van Leeuwenhoek 113: 1767 - 1778 2020 ( DOI 10.1007/s10482-019-01368-3 )

#69075

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103767

#114783

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406015.1 )

* These data were automatically processed and therefore are not curated

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