Anaerobiospirillum succiniciproducens S411 | Type strain | DSM 6400, ATCC 29305 | BacDiveID:16633

Strain identifier

BacDive ID: 16633

Type strain:

Species: Anaerobiospirillum succiniciproducens

Strain Designation: S411

Culture col. no.: DSM 6400, ATCC 29305

Strain history: <- ATCC <- C.P. Davis, S411 <- D. Cleven

NCBI tax ID(s): 1120988 (strain), 13335 (species)

SI-ID 888

LMG 7826, ATCC 29305, CCUG 21558, NCTC 11536, CCUG 24194, DSM 6400

Other strains from Anaerobiospirillum succiniciproducens

A. succiniciproducens CCUG 37578

Section

Anaerobiospirillum succiniciproducens S411 is an anaerobe, mesophilic, Gram-negative human pathogen that was isolated from throat of dog.

Gram-negative
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Succinivibrionaceae*
	Genus	*Anaerobiospirillum*
	Species	**Anaerobiospirillum succiniciproducens**
	Full Scientific Name (LPSN)	Anaerobiospirillum succiniciproducens Davis et al. 1976 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

Incubation period

1-2 days

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2474]			growth	37 °C

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2474]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.309

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

Name of produced compound

succinate

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]		arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]		D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]		L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]		nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]		raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]		tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]		urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68380]		alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]		alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]		alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]		alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]		alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]		alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]		arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]		beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]		beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]		beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]		beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]		glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]		glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]		glycin arylamidase	+		* from API rID32A
[Ref.: #68380]		histidine arylamidase	-		* from API rID32A
[Ref.: #68380]		L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]		leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]		leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]		N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]		phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]		proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]		pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]		tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]		tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]		urease	-	3.5.1.5	* from API rID32A
		Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #2474]	12147	-	-	-	+	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	+	-	-	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2474]	Sample type/isolated from	throat of dog
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Oral cavity and airways	#Throat

What are isolation sources categories?

Global distribution of 16S sequence U96412 (>99% sequence identity) for Anaerobiospirillum succiniciproducens subclade from Microbeatlas

Aquatic Samples	136
Soil Samples	164
Animal Samples	14542
Plant Samples	39
Total Samples	14881

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2474]	Pathogenicity (human)	yes
[Ref.: #2474]	Pathogenicity (animal)	yes
[Ref.: #2474]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Anaerobiospirillum succiniciproducens ATCC:29305 16S-23S ribosomal intergenic spacer and 23S ribosomal RNA gene, partial sequence	FJ410379	2940	ENA	13335 tax ID	*
[Ref.: #20218]	Anaerobiospirillum succiniciproducens 16S ribosomal RNA gene, complete sequence	U96412	1468	ENA	13335 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerobiospirillum succiniciproducens DSM 6400	GCA_000482845	scaffold	GenBank	1120988 tax ID	*
[Ref.: #66792]	Anaerobiospirillum succiniciproducens DSM 6400	1120988.3	wgs	PATRIC	1120988 tax ID	*
[Ref.: #66792]	Anaerobiospirillum succiniciproducens DSM 6400	2528768184	draft	JGI IMG/M	1120988 tax ID	*

GC-content

44.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerobiospirillum succiniciproducens DSM 6400 DSM 6400 NCBI: GCA_000482845.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerobiospirillum succiniciproducens DSM 6400 DSM 6400 NCBI: GCA_000482845.1
[Ref.: #69480]	motile	yes	75.909	no
[Ref.: #69480]	flagellated	no	61.029	no
[Ref.: #69480]	gram-positive	no	98.382	no
[Ref.: #69480]	anaerobic	yes	92.799	yes
[Ref.: #69480]	aerobic	no	96.871	yes
[Ref.: #69480]	halophile	no	77.49	no
[Ref.: #69480]	spore-forming	no	98.204	no
[Ref.: #69480]	thermophile	no	95.336	yes
[Ref.: #69480]	glucose-util	yes	67.14	no
[Ref.: #69480]	glucose-ferment	yes	66.521	no

Availability in culture collections External links

Culture collection no.

DSM 6400, ATCC 29305

SI-ID 888

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Succinic acid production by Anaerobiospirillum succiniciproducens ATCC 29305 growing on galactose, galactose/glucose, and galactose/lactose.	Lee PC, Lee SY, Chang HN	J Microbiol Biotechnol	10.4014/jmb.0800.129	2008	*
Phylogeny	Three cases of Anaerobiospirillum succiniciproducens bacteremia confirmed by 16S rRNA gene sequencing.	Tee W, Korman TM, Waters MJ, Macphee A, Jenney A, Joyce L, Dyall-Smith ML	J Clin Microbiol	10.1128/JCM.36.5.1209-1213.1998	1998	*

References

#2474

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6400

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85654

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID888.1 )

* These data were automatically processed and therefore are not curated

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