Yersinia rochesterensis (ATCC BAA-2637, DSMZ 28595, EPLC-04)

Name: Yersinia rochesterensis (ATCC BAA-2637, DSMZ 28595, EPLC-04)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166295

Type strain

Strain Designation EPLC-04

Culture col. no. ATCC BAA-2637 DSMZ 28595 EPLC-04

NCBI tax ID(s) 1604335

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Yersinia rochesterensis EPLC-04 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from human feces.

Gram-negative motile rod-shaped colony-forming genome sequence Bacteria

Name and taxonomic classification

SI-ID 412967

DSM 110739,ATCC BAA-2637,CIP 111843

@ref 20215

Last LPSN update 2026-05-29 08:45:51

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia rochesterensis

Full scientific name Yersinia rochesterensis (Cunningham et al. 2019) Nguyen et al. 2021

Synonyms (2)

Yersinia occitanica
Yersinia kristensenii subsp. rochesterensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Flagellum arrangement
68130	negative	rod-shaped		peritrichous

Colony morphology

@ref	Colony shape	Incubation period
68130	circular	2 days

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.12

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68130	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	+/-	assimilation
68130	22599 ChEBI	arabinose	+/-	fermentation
68130	17057 ChEBI	cellobiose	+	fermentation
68130	16947 ChEBI	citrate	-	assimilation
68130	65327 ChEBI	D-xylose	+	fermentation
68130	4853 ChEBI	esculin	-	hydrolysis
68130	17234 ChEBI	glucose	+	fermentation
68130	17754 ChEBI	glycerol	+	fermentation
68130	35581 ChEBI	indole	+	assimilation
68130	62345 ChEBI	L-rhamnose	-	fermentation
68130	17306 ChEBI	maltose	+	fermentation
68130	29864 ChEBI	mannitol	+	fermentation
68130	28053 ChEBI	melibiose	-	fermentation
68130	17632 ChEBI	nitrate	+	reduction
68130	16634 ChEBI	raffinose	-	fermentation
68130	30911 ChEBI	sorbitol	+	fermentation
68130	27922 ChEBI	sorbose	+	fermentation
68130	17992 ChEBI	sucrose	-	fermentation
68130	27082 ChEBI	trehalose	+	fermentation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68130	15688 ChEBI	acetoin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
68130	15688 ChEBI	acetoin	-
68130	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68130	catalase	+	1.11.1.6
68130	cytochrome oxidase	-	1.9.3.1
68130	lipase	+
68130	ornithine decarboxylase	+	4.1.1.17
68130	pyrazinamidase	-	3.5.1.B15
68130	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Enrichment culture	Enrichment culture composition
68130	human feces	Homo sapiens	SBA	5 %

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM360064v1 assembly for Yersinia rochesterensis ATCC BAA-2637	chromosome	GCA_003600645	28152.31	2851718267	1604335	88.79

GC content

@ref	GC-content (mol%)	Method
68130	47.48	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM360064v1 assembly for Yersinia rochesterensis ATCC BAA-2637
NCBI: GCA_003600645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	motility	BacteriaNetⓘ	no	62.74	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	72.71	no
125439	gram_stain	BacteriaNetⓘ	negative	83.74	no
125439	spore_formation	BacteriaNetⓘ	no	98.12	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68130	Scott A. Cunningham, Patricio Jeraldo, Robin Patel: Yersinia kristensenii subsp. rochesterensis subsp. nov., isolated from human feces. IJSEM 69: 2292 - 2298 2019 ( DOI 10.1099/ijsem.0.003464 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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