Acidibrevibacterium fodinaquatile (CGMCC 1.16069, KCTC 62275, G45-3)

Name: Acidibrevibacterium fodinaquatile (CGMCC 1.16069, KCTC 62275, G45-3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166226

Type strain

Strain Designation G45-3

Culture col. no. CGMCC 1.16069 KCTC 62275 G45-3

NCBI tax ID(s) 1969806

Special Collections KCTC Literature strains

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Acidibrevibacterium fodinaquatile G45-3 is an obligate aerobe, chemoorganotroph, Gram-negative prokaryote that was isolated from acidic mine drainage samples.

Gram-negative rod-shaped obligate aerobe chemoorganotroph genome sequence 16S sequence

Name and taxonomic classification

SI-ID 25463

KCTC 62275

@ref 20215

Last LPSN update 2025-12-16 10:09:50

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acidibrevibacterium

Species Acidibrevibacterium fodinaquatile

Full scientific name Acidibrevibacterium fodinaquatile Muhadesi et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
68197	negative	3.2-3.3 µm	1.3-1.5 µm	rod-shaped

Colony morphology

68197

Colony colorlight yellow

Pigmentation

@ref	Production	Name
68197		BChl a
68197		Carotenoid pigments

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
68197	positive	growth	20-45
68197	positive	optimum	37

Culture pH

@ref	Ability	Type	PH
68197	positive	optimum	4
68197	positive	growth	2.5-5

Physiology and metabolism

Oxygen tolerance

68197

Oxygen toleranceobligate aerobe

Nutrition type

68197

Typechemoorganotroph

Spore formation

68197

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68197	NaCl	positive	maximum	1 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68197	16449 ChEBI	alanine	+/-	carbon source
68197	22653 ChEBI	asparagine	+/-	carbon source
68197	35391 ChEBI	aspartate	+/-	carbon source
68197		butanol	-	carbon source
68197		casamino acids	-	carbon source
68197		casein	-	hydrolysis
68197	17108 ChEBI	D-arabinose	+	builds acid from
68197	28847 ChEBI	D-fucose	+	builds acid from
68197	12936 ChEBI	D-galactose	+	builds acid from
68197	17634 ChEBI	D-glucose	+	builds acid from
68197	17634 ChEBI	D-glucose	+	assimilation
68197	17634 ChEBI	D-glucose	+	carbon source
68197	62318 ChEBI	D-lyxose	+	builds acid from
68197	16899 ChEBI	D-mannitol	-	assimilation
68197	16899 ChEBI	D-mannitol	-	carbon source
68197	16024 ChEBI	D-mannose	-	assimilation
68197	16024 ChEBI	D-mannose	-	carbon source
68197	16988 ChEBI	D-ribose	+	builds acid from
68197	65327 ChEBI	D-xylose	+	builds acid from
68197	65327 ChEBI	D-xylose	+	carbon source
68197	4853 ChEBI	esculin	-	hydrolysis
68197	16236 ChEBI	ethanol	+	carbon source
68197	29806 ChEBI	fumarate	-	carbon source
68197	28260 ChEBI	galactose	+	carbon source
68197	5291 ChEBI	gelatin	-	hydrolysis
68197	17234 ChEBI	glucose	+	fermentation
68197	17754 ChEBI	glycerol	-	carbon source
68197	30849 ChEBI	L-arabinose	+	builds acid from
68197	30849 ChEBI	L-arabinose	+	assimilation
68197	30849 ChEBI	L-arabinose	+/-	carbon source
68197	16467 ChEBI	L-arginine	+	hydrolysis
68197	18287 ChEBI	L-fucose	+	builds acid from
68197	62345 ChEBI	L-rhamnose	+	builds acid from
68197	65328 ChEBI	L-xylose	+	builds acid from
68197	25115 ChEBI	malate	-	assimilation
68197	25115 ChEBI	malate	-	carbon source
68197	17306 ChEBI	maltose	+/-	assimilation
68197	17790 ChEBI	methanol	+/-	carbon source
68197	59640 ChEBI	N-acetylglucosamine	-	assimilation
68197	17632 ChEBI	nitrate	+	reduction
68197	18401 ChEBI	phenylacetate	-	assimilation
68197	32032 ChEBI	potassium gluconate	+	builds acid from
68197	28831 ChEBI	propanol	+/-	carbon source
68197	15361 ChEBI	pyruvate	-	carbon source
68197	53258 ChEBI	sodium citrate	-	assimilation
68197	28017 ChEBI	starch	-	hydrolysis
68197	30031 ChEBI	succinate	-	carbon source
68197	53426 ChEBI	tween 80	-	hydrolysis
68197	16199 ChEBI	urea	+	hydrolysis

Enzymes

@ref	Value	Activity	Ec
68197	acid phosphatase	+	3.1.3.2
68197	alkaline phosphatase	+	3.1.3.1
68197	alpha-chymotrypsin	+	3.4.21.1
68197	catalase	+	1.11.1.6
68197	cystine arylamidase	+	3.4.11.3
68197	cytochrome oxidase	+	1.9.3.1
68197	esterase (C 4)	+
68197	esterase Lipase (C 8)	+
68197	leucine arylamidase	+	3.4.11.1
68197	naphthol-AS-BI-phosphohydrolase	+
68197	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

68197

Fatty acid	Percentage
C19:0 cyclo w8c	31.7
C18:1 w7c	24.1
C16:0	22
C18:0	9.4
C14:0 3OH/iso-C16:1 I	3.3
C18:0 3OH	2.1
C16:1 w7c/C16:1 w6c	2
C18:1 2OH	1.6
C17:0 iso 3OH	1.2
C18:1 11-methyl w7c	0.5
C20:2 w6,9c	0.5
C16:0 10-methyl	0.4
C15:0 iso	0.4
C14:0	0.3
C16:0 3OH	0.2
C15:0 iso 3OH	0.2
C19:0 10-methyl	0.2
C17:0 cyclo	0.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
68197	acidic mine drainage samples	Zijin copper mine area of Shanghang County, Fujian Province	China	CHN	Asia	G4 medium	7-10 days	45

Taxonmaps

69479

Global distribution of 16S sequence KY777995 (>99% sequence identity) for Acidibrevibacterium fodinaquatile subclade from Microbeatlas

Aquatic Samples	246
Soil Samples	156
Animal Samples	59
Plant Samples	10
Total Samples	471

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
68197	ASM335216v1 assembly for Acidibrevibacterium fodinaquatile G45-3	complete	GCA_003352165	1969806.3	2841042143	1969806	97.95

Genome browser: GCA_003352165

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
68197	Acidibrevibacterium fodinaquatile strain G45-3 16S ribosomal RNA gene, partial sequence	KY777995	1418		1969806

GC content

@ref	GC-content (mol%)	Method
68197	65.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acidibrevibacterium fodinaquatile G45-3
NCBI: GCA_003352165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	86.90	no
125439	motility	BacteriaNetⓘ	no	62.40	no
125439	gram_stain	BacteriaNetⓘ	negative	89.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidibrevibacterium fodinaquatile gen. nov., sp. nov., isolated from acidic mine drainage.	Muhadesi JB, Huang Y, Wang BJ, Jiang CY, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003618	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68197	Jiang-Baota Muhadesi, Ye Huang, Bao-Jun Wang, Cheng-Ying Jiang and Shuang-Jiang Liu: Acidibrevibacterium fodinaquatile gen. nov., sp. nov., isolated from acidic mine drainage. IJSEM 69: 3248 - 3255 2019 ( DOI 10.1099/ijsem.0.003618 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidibrevibacterium fodinaquatile (CGMCC 1.16069, KCTC 62275, G45-3)

Name and taxonomic classification