Acidimangrovimonas sediminis (MCCC 1K02682, NBRC 112978, MS2-2)

Name: Acidimangrovimonas sediminis (MCCC 1K02682, NBRC 112978, MS2-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166169

Type strain

Strain Designation MS2-2

Culture col. no. MCCC 1K02682 NBRC 112978 MS2-2

NCBI tax ID(s) 2056283

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Acidimangrovimonas sediminis MS2-2 is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from mangrove sediment.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132155

NBRC 112978

@ref 20215

Last LPSN update 2025-12-16 10:09:50

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Acidimangrovimonas

Species Acidimangrovimonas sediminis

Full scientific name Acidimangrovimonas sediminis Ren et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
67984	negative	2.0-6.0 µm	1.5-2.3 µm	rod-shaped
125439	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
67984	0.5-1.0 mm	white	circular	2 days	Zobell 2216E agar

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67984	positive	growth	16-41
67984	positive	optimum	34

Culture pH

@ref	Ability	Type	PH
67984	positive	optimum	6
67984	positive	growth	3.6-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
67984	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		93.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67984	NaCl	positive	growth	0.5-10.0 %
67984	NaCl	positive	optimum	4 %

Observation

@ref	Observation
67984	The respiratory quinone is Q-10
67984	The main polar lipids are diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, five unidentified glycolipids, one unidentified phospholipids and two unidentified polar lipids

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67984	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	+	assimilation
67984	17128 ChEBI	adipate	-	assimilation
67984	27613 ChEBI	amygdalin	-	assimilation
67984	29016 ChEBI	arginine	+	hydrolysis
67984	16947 ChEBI	citrate	-	assimilation
67984	17634 ChEBI	D-glucose	+	assimilation
67984	16899 ChEBI	D-mannitol	+	assimilation
67984	16024 ChEBI	D-mannose	+	assimilation
67984	27689 ChEBI	decanoate	-	assimilation
67984	4853 ChEBI	esculin	-	hydrolysis
67984	5291 ChEBI	gelatin	-	hydrolysis
67984	17120 ChEBI	hexanoate	-	assimilation
67984	30849 ChEBI	L-arabinose	+	assimilation
67984	25094 ChEBI	lysine	-	hydrolysis
67984	25115 ChEBI	malate	+	assimilation
67984	17306 ChEBI	maltose	-	assimilation
67984	28053 ChEBI	melibiose	+	assimilation
67984	17268 ChEBI	myo-inositol	-	assimilation
67984	59640 ChEBI	N-acetylglucosamine	+	assimilation
67984	17632 ChEBI	nitrate	-	reduction
67984		O-nitrophenyl-beta-D-galactopyranosid	-	assimilation
67984	18257 ChEBI	ornithine	-	hydrolysis
67984	18401 ChEBI	phenylacetate	-	assimilation
67984	32032 ChEBI	potassium gluconate	+	assimilation
67984	53258 ChEBI	sodium citrate	-	assimilation
67984	30911 ChEBI	sorbitol	-	assimilation
67984	17992 ChEBI	sucrose	-	assimilation
67984	27897 ChEBI	tryptophan	-	hydrolysis
67984	16199 ChEBI	urea	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67984	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
67984	acid phosphatase	+	3.1.3.2
67984	alkaline phosphatase	+	3.1.3.1
67984	alpha-chymotrypsin	+/-	3.4.21.1
67984	alpha-galactosidase	-	3.2.1.22
67984	alpha-glucosidase	+	3.2.1.20
67984	alpha-mannosidase	-	3.2.1.24
67984	beta-D-fucosidase	-	3.2.1.38
67984	beta-galactosidase	-	3.2.1.23
67984	beta-glucosidase	+/-	3.2.1.21
67984	beta-glucuronidase	+/-	3.2.1.31
67984	catalase	+	1.11.1.6
67984	cystine arylamidase	+/-	3.4.11.3
67984	cytochrome oxidase	+	1.9.3.1
67984	esterase (C 4)	+
67984	esterase Lipase (C 8)	+
67984	leucine arylamidase	+	3.4.11.1
67984	lipase (C 14)	+/-
67984	N-acetyl-beta-glucosaminidase	+/-	3.2.1.52
67984	naphthol-AS-BI-phosphohydrolase	+/-
67984	trypsin	-	3.4.21.4
67984	valine arylamidase	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67984	mangrove sediment	Jiulong River Estuary, Fujian Province	China	CHN	Asia	24.45	117.9 24.45/117.9

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67984	ASM287100v1 assembly for Acidimangrovimonas sediminis MS2-2	contig	GCA_002871005	2056283.5	2833082749	2056283	55.98

Genome browser: GCA_002871005

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67984	Acidimangrovimonas sediminis strain MS2-2 16S ribosomal RNA gene, partial sequence	KX099618	1434		2056283

GC content

@ref	GC-content (mol%)	Method
67984	67.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acidimangrovimonas sediminis MS2-2
NCBI: GCA_002871005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.20	no
125439	motility	BacteriaNetⓘ	yes	59.20	no
125439	gram_stain	BacteriaNetⓘ	negative	95.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidimangrovimonas sediminis gen. nov., sp. nov., isolated from mangrove sediment and reclassification of Defluviimonas indica as Acidimangrovimonas indica comb. nov. and Defluviimonas pyrenivorans as Acidimangrovimonas pyrenivorans comb. nov.	Ren H, Ma H, Li H, Huang L, Luo Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003513	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67984	Hao Ren, Hui Ma, Hao Li, Lingfeng Huang, Yuanrong Luo: Acidimangrovimonas sediminis gen. nov., sp. nov., isolated from mangrove sediment and reclassification of Defluviimonas indica as Acidimangrovimonas indica comb. nov. and Defluviimonas pyrenivorans as Acidimangrovimonas pyrenivorans comb. nov.. IJSEM 69: 2445 - 2451 2019 ( DOI 10.1099/ijsem.0.003513 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidimangrovimonas sediminis (MCCC 1K02682, NBRC 112978, MS2-2)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002871005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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