"Fibrisoma montanum" HYT19 is an obligate aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from soil of Mountain Danxia.
Gram-negative rod-shaped colony-forming obligate aerobe genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacteroidota |
| Class Cytophagia |
| Order Cytophagales |
| Family Spirosomataceae |
| Genus Fibrisoma |
| Species "Fibrisoma montanum" |
| Full scientific name Fibrisoma montanum Huang et al. 2020 |
| @ref | Colony color | Colony shape | Incubation period | Medium used | |
|---|---|---|---|---|---|
| 68258 | orange | circular | 4 days | Reasoner's 2A agar (R2A) |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 96.6 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 68258 | NaCl | positive | growth | 0 %(w/v) |
| 68258 | Observationcells tend to link together in chains |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68258 | 17128 ChEBI | adipate | - | assimilation | |
| 68258 | 85146 ChEBI | carboxymethylcellulose | - | hydrolysis | |
| 68258 | 17057 ChEBI | cellobiose | - | assimilation | |
| 68258 | 15824 ChEBI | D-fructose | - | assimilation | |
| 68258 | 12936 ChEBI | D-galactose | - | assimilation | |
| 68258 | 17634 ChEBI | D-glucose | - | assimilation | |
| 68258 | 16899 ChEBI | D-mannitol | - | assimilation | |
| 68258 | 16024 ChEBI | D-mannose | - | assimilation | |
| 68258 | 16988 ChEBI | D-ribose | - | assimilation | |
| 68258 | 17924 ChEBI | D-sorbitol | - | assimilation | |
| 68258 | 16551 ChEBI | D-trehalose | - | assimilation | |
| 68258 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68258 | 5291 ChEBI | gelatin | + | hydrolysis | |
| 68258 | 17120 ChEBI | hexanoate | - | assimilation | |
| 68258 | 30849 ChEBI | L-arabinose | - | assimilation | |
| 68258 | 17266 ChEBI | L-sorbose | - | assimilation | |
| 68258 | 17716 ChEBI | lactose | - | assimilation | |
| 68258 | 25115 ChEBI | malate | - | assimilation | |
| 68258 | 17306 ChEBI | maltose | - | assimilation | |
| 68258 | milk | - | assimilation | ||
| 68258 | 506227 ChEBI | N-acetyl-D-glucosamine | - | assimilation | |
| 68258 | 18401 ChEBI | phenylacetate | - | assimilation | |
| 68258 | 32032 ChEBI | potassium gluconate | - | assimilation | |
| 68258 | 16634 ChEBI | raffinose | - | assimilation | |
| 68258 | 26546 ChEBI | rhamnose | - | assimilation | |
| 68258 | 53258 ChEBI | sodium citrate | - | assimilation | |
| 68258 | 28017 ChEBI | starch | - | hydrolysis | |
| 68258 | 17992 ChEBI | sucrose | - | assimilation | |
| 68258 | 53423 ChEBI | tween 40 | - | hydrolysis | |
| 68258 | 53425 ChEBI | tween 60 | - | hydrolysis | |
| 68258 | 53426 ChEBI | tween 80 | - | hydrolysis |
| @ref | ChEBI | Metabolite | Is sensitive | Sensitivity conc. | Is resistant | Resistance conc. | |
|---|---|---|---|---|---|---|---|
| 68258 | 28971 | ampicillin | 10 Unit | ||||
| 68258 | 474053 | cefazolin | 30 µg | ||||
| 68258 | 3493 | cefoperazone | 75 µg | ||||
| 68258 | 29007 | ceftriaxone | 30 µg | ||||
| 68258 | 3515 | cefuroxime | 30 µg | ||||
| 68258 | 3534 | cephalexin | 30 µg | ||||
| 68258 | 17698 | chloramphenicol | 30 µg | ||||
| 68258 | 100241 | ciprofloxacin | 5 µg (disc) | ||||
| 68258 | 6104 | kanamycin | 30 µg | ||||
| 68258 | 31845 | medicamycin | 30 µg | ||||
| 68258 | 100246 | norfloxacin | 10 µg | ||||
| 68258 | 7731 | ofloxacin | 5 µg | ||||
| 68258 | 17334 | penicillin | 10 Unit | ||||
| 68258 | 8232 | piperacillin | 100 µg | ||||
| 68258 | 8309 | polymyxin b | 300 Unit | ||||
| 68258 | 28077 | rifampicin | 5 µg | ||||
| 68258 | 27902 | tetracycline | 30 µg | ||||
| 68258 | 28001 | vancomycin | 30 µg |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68258 | acid phosphatase | + | 3.1.3.2 | |
| 68258 | alkaline phosphatase | + | 3.1.3.1 | |
| 68258 | alpha-chymotrypsin | + | 3.4.21.1 | |
| 68258 | alpha-galactosidase | + | 3.2.1.22 | |
| 68258 | alpha-glucosidase | + | 3.2.1.20 | |
| 68258 | alpha-mannosidase | + | 3.2.1.24 | |
| 68258 | arginine dihydrolase | + | 3.5.3.6 | |
| 68258 | beta-galactosidase | + | 3.2.1.23 | |
| 68258 | beta-glucosidase | + | 3.2.1.21 | |
| 68258 | cystine arylamidase | + | 3.4.11.3 | |
| 68258 | esterase (C 4) | + | ||
| 68258 | esterase Lipase (C 8) | + | ||
| 68258 | leucine arylamidase | + | 3.4.11.1 | |
| 68258 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | |
| 68258 | naphthol-AS-BI-phosphohydrolase | + | ||
| 68258 | trypsin | + | 3.4.21.4 | |
| 68258 | valine arylamidase | + |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||
| incubation medium | R2A broth | ||||||||||||||||||||||||||||||||
| software version | Sherlock 6.2 | ||||||||||||||||||||||||||||||||
| library/peak naming table | TSBA6 | ||||||||||||||||||||||||||||||||
| system | MIS MIDI | ||||||||||||||||||||||||||||||||
| instrument | 6890; Hewlett Packard | ||||||||||||||||||||||||||||||||
| method/protocol | Sasser, 1990 | ||||||||||||||||||||||||||||||||
| @ref | 68258 | ||||||||||||||||||||||||||||||||
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| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Enrichment culture composition | Enrichment culture duration | Enrichment culture temperature | |
|---|---|---|---|---|---|---|---|---|---|
| 68258 | soil of Mountain Danxia | Shaoguan in Guangdong province | China | CHN | Asia | R2A agar | 1-2 weeks | 28 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 68258 | ASM358336v1 assembly for Fibrisoma montanum HYT19 | scaffold | 2305895 | 71.1 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 68258 | Fibrisoma montanum 16S ribosomal RNA gene, partial sequence | MH989567 | 1468 | 2305895 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 68258 | 54 | genome sequence analysis |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Fibrisoma montanum sp. nov., isolated from soil of Mountain Danxia, China. | Huang Y, Niu Y, Wang G, Zheng S | Arch Microbiol | 10.1007/s00203-019-01741-w | 2019 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #68258 | Yeting Huang, Yaxin Niu, Gejiao Wang & Shixue Zheng: Fibrisoma montanum sp. nov., isolated from soil of Mountain Danxia, China. Arch Microbiol 202: 269 - 273 2020 ( DOI 10.1007/s00203-019-01741-w ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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