Name: Pararcticibacter amylolyticus FJ4-8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 166116

Type strain:

Species: Pararcticibacter amylolyticus

Strain Designation: FJ4-8

Culture col. no.: KCTC 62640, CCTCC AB 2018052

NCBI tax ID(s): 2173175 (species)

Special Collections

Section

Pararcticibacter amylolyticus FJ4-8 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from rotten hemp rope.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pararcticibacter*
	Species	**Pararcticibacter amylolyticus**
	Full Scientific Name (LPSN)	Pararcticibacter amylolyticus Cai et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68062]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.024

[Ref.: #68062]	Cell length	1.4-1.8 µm

[Ref.: #68062]	Cell width	0.5-0.7 µm

[Ref.: #68062]	Cell shape	rod-shaped

[Ref.: #68062]	Motility	no

[Ref.: #68062]	Colony size	2.0-3.0 mm
[Ref.: #68062]	Colony color	pink
[Ref.: #68062]	Incubation period	3 days
[Ref.: #68062]	Cultivation medium used	Reasoner's 2A agar (R2A)

[Ref.: #68062]	Pigment production	no
[Ref.: #68062]	Pigment name	Flexirubin type pigments

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #68062]			growth	15-42 °C
[Ref.: #68062]			optimum	37 °C

	pH	Kind of pH		pH
[Ref.: #68062]			optimum	7.5
[Ref.: #68062]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68062]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68062]		NaCl		growth	0.0-2.0	%
[Ref.: #68062]		NaCl		optimum	0.5-1.5	%

[Ref.: #68062]	Observation	The polar lipids consist of phosphatidylethanolamine, aminophospholipid and an unidentified lipid
[Ref.: #68062]	Observation	The only menaquinone is MK-7
[Ref.: #68062]	Observation	The major polyamine is sym-homospermidine

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68062]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #68062]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #68062]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #68062]	alpha-lactose ChEBI	+	assimilation
[Ref.: #68062]	casein	-	hydrolysis
[Ref.: #68062]	cellobiose ChEBI	+	assimilation
[Ref.: #68062]	cellulose ChEBI	+	builds acid from
[Ref.: #68062]	cellulose ChEBI	-	hydrolysis
[Ref.: #68062]	D-arabinose ChEBI	+	builds acid from
[Ref.: #68062]	D-arabinose ChEBI	+	assimilation
[Ref.: #68062]	D-galactose ChEBI	+	builds acid from
[Ref.: #68062]	D-galactose ChEBI	+	assimilation
[Ref.: #68062]	D-glucose ChEBI	+	builds acid from
[Ref.: #68062]	D-glucose ChEBI	+	fermentation
[Ref.: #68062]	D-glucose ChEBI	+	assimilation
[Ref.: #68062]	D-mannitol ChEBI	-	assimilation
[Ref.: #68062]	D-mannose ChEBI	+	builds acid from
[Ref.: #68062]	D-mannose ChEBI	+	assimilation
[Ref.: #68062]	D-ribose ChEBI	-	builds acid from
[Ref.: #68062]	D-ribose ChEBI	-	assimilation
[Ref.: #68062]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #68062]	D-sorbitol ChEBI	-	assimilation
[Ref.: #68062]	D-xylose ChEBI	+	builds acid from
[Ref.: #68062]	D-xylose ChEBI	+	assimilation
[Ref.: #68062]	decanoate ChEBI	-	assimilation
[Ref.: #68062]	esculin ChEBI	+	hydrolysis
[Ref.: #68062]	fructose ChEBI	+	builds acid from
[Ref.: #68062]	fructose ChEBI	+	assimilation
[Ref.: #68062]	gelatin ChEBI	-	hydrolysis
[Ref.: #68062]	glycerol ChEBI	-	builds acid from
[Ref.: #68062]	glycogen ChEBI	+	assimilation
[Ref.: #68062]	itaconate ChEBI	-	assimilation
[Ref.: #68062]	L-alanine ChEBI	-	assimilation
[Ref.: #68062]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68062]	L-arabinose ChEBI	+	assimilation
[Ref.: #68062]	L-fucose ChEBI	-	assimilation
[Ref.: #68062]	L-histidine ChEBI	-	assimilation
[Ref.: #68062]	L-proline ChEBI	-	assimilation
[Ref.: #68062]	L-rhamnose ChEBI	+	assimilation
[Ref.: #68062]	L-serine ChEBI	-	assimilation
[Ref.: #68062]	lactate ChEBI	-	assimilation
[Ref.: #68062]	lactose ChEBI	+	builds acid from
[Ref.: #68062]	maltose ChEBI	+	builds acid from
[Ref.: #68062]	maltose ChEBI	+	assimilation
[Ref.: #68062]	mannitol ChEBI	-	builds acid from
[Ref.: #68062]	melibiose ChEBI	+	assimilation
[Ref.: #68062]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68062]	myo-inositol ChEBI	-	assimilation
[Ref.: #68062]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #68062]	nitrate ChEBI	-	reduction
[Ref.: #68062]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #68062]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #68062]	propionate ChEBI	-	assimilation
[Ref.: #68062]	raffinose ChEBI	+	assimilation
[Ref.: #68062]	rhamnose ChEBI	+	builds acid from
[Ref.: #68062]	salicin ChEBI	+	assimilation
[Ref.: #68062]	sodium acetate ChEBI	-	assimilation
[Ref.: #68062]	sodium citrate ChEBI	-	assimilation
[Ref.: #68062]	sodium malonate ChEBI	-	assimilation
[Ref.: #68062]	starch ChEBI	+	hydrolysis
[Ref.: #68062]	suberate ChEBI	-	assimilation
[Ref.: #68062]	sucrose ChEBI	+	builds acid from
[Ref.: #68062]	sucrose ChEBI	+	assimilation
[Ref.: #68062]	trehalose ChEBI	+	builds acid from
[Ref.: #68062]	tween 20 ChEBI	-	hydrolysis
[Ref.: #68062]	tween 80 ChEBI	-	hydrolysis
[Ref.: #68062]	tyrosine ChEBI	-	hydrolysis
[Ref.: #68062]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68062]		hydrogen sulfide ChEBI	no
[Ref.: #68062]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #68062]		acetoin ChEBI	-
[Ref.: #68062]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68062]	acid phosphatase	+	3.1.3.2
[Ref.: #68062]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68062]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68062]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68062]	beta-galactosidase	+	3.2.1.23
[Ref.: #68062]	beta-glucosidase	+	3.2.1.21
[Ref.: #68062]	catalase	+	1.11.1.6
[Ref.: #68062]	cystine arylamidase	+	3.4.11.3
[Ref.: #68062]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68062]	esterase (C 4)	+
[Ref.: #68062]	esterase Lipase (C 8)	+
[Ref.: #68062]	lipase (C 14)	+
[Ref.: #68062]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68062]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68062]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68062]

Fatty acid	Percentage
C15:0 iso	42.5
C17:0 iso 3OH	17.2
C16:1 w7c / C16:1 w6c	13
C17:1 ISO I/C16:0 DMA	5.2
C15:0 iso 3OH	3.4
C15:0 anteiso	2.7
C16:1 w5c	2.3
C16:0	2
C15:0	1.7
C13:0 3OH/C15:1 i I/H	1
C17:1 ISO I/anteiso B	1
C17:0 2OH	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68062]	Sample type/isolated from	rotten hemp rope
[Ref.: #68062]	Geographic location (country and/or sea, region)	Jinyun mountain, Chongqing
[Ref.: #68062]	Country	China
[Ref.: #68062]	Country ISO 3 Code	CHN
[Ref.: #68062]	Continent	Asia
[Ref.: #68062]	Geographic location	29.8450°/106.3910°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68062]	Pararcticibacter amylolyticus 16S ribosomal RNA gene, partial sequence	MG719992	1486	GenBank ENA	2173175 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68062]	Pararcticibacter amylolyticus FJ4-8	GCA_003130405	scaffold	GenBank ENA	2173175 tax ID

[Ref.: #68062]

GC-content

44.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pararcticibacter amylolyticus FJ4-8 NCBI: GCA_003130405.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pararcticibacter amylolyticus FJ4-8 NCBI: GCA_003130405.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.024	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.075	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	56.142	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.775	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.49	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.5	yes

Availability in culture collections External links

[Ref.: #68062]

Culture collection no.

KCTC 62640, CCTCC AB 2018052

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pararcticibacter amylolyticus gen. nov., sp. nov., Isolated from a Rotten Hemp Rope, and Reclassification of Pedobacter tournemirensis as Pararcticibacter tournemirensis comb. nov.	Cai YY, Dong WW, Hu YL, Jiang X, Wang YW, Zhou YQ, Peng N, Liang YX, Zhao SM	Curr Microbiol	10.1007/s00284-019-01828-z	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68062

Yu-yuan Cai, Wei-wei Dong, Yuan-liang Hu, Xu Jiang, Yan-wei Wang, Yi-qing Zhou, Nan Peng, Yun-xiang Liang, Shu-miao Zhao: Pararcticibacter amylolyticus gen. nov., sp. nov., Isolated from a Rotten Hemp Rope, and Reclassification of Pedobacter tournemirensis as Pararcticibacter tournemirensis comb. nov.. Arch Microbiol 77: 320 - 306 2020 ( DOI 10.1007/s00284-019-01828-z )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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