Streptosporangium amethystogenes subsp. amethystogenes (DSM 43179, ATCC 33327, CBS 430.61)

Name: Streptosporangium amethystogenes subsp. amethystogenes (DSM 43179, ATCC 33327, CBS 430.61)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16609

Type strain

Strain Designation S-5

Culture col. no. DSM 43179 ATCC 33327 CBS 430.61 KCC A-0026 NRRL B-2639 15 more

NCBI tax ID(s) 2002 698417

Special Collections DSMZ JCM KCTC Wink compendium JMRC

History DSMZ <- KCC <- H. Nonomura, FYU S-5 JCM <-- KCC A-0026 <-- H. Nonomura S-5.

Links

Streptosporangium amethystogenes subsp. amethystogenes S-5 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265449

ATCC 33327,NRRL B-2639,DSM 43179,JCM 3026,CCRC 12519,IFO 13986,IMET 9011,VKM Ac-637,CBS 430.61,AS 4.1090,KCTC 9430,NBRC 13986,BCRC 12519,CGMCC 4.2069,CGMCC 4.1090

@ref 20215

Last LPSN update 2026-05-29 08:28:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Streptosporangium

Species Streptosporangium amethystogenes subsp. amethystogenes

Full scientific name Streptosporangium amethystogenes subsp. amethystogenes (Nonomura and Ohara 1960) Iinuma et al. 1996

BacDive ID	Other strains from **Streptosporangium amethystogenes subsp. amethystogenes** (3)	Type strain
16610	S. amethystogenes subsp. amethystogenes 496-326, DSM 46128, ATCC 23818, IMET 9009
16611	S. amethystogenes subsp. amethystogenes 496-604a, 723-120, 934-10, DSM 46129, IMET ...
16612	S. amethystogenes subsp. amethystogenes S2-27, DSM 46134, IMET 9023

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		91.327
125439		97.689	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
19946	Ochre yellow (1024)	10-14 days	ISP 2
19946	Ochre yellow (1024)	10-14 days	ISP 3
19946	Ochre yellow (1024)	10-14 days	ISP 4
19946	Ochre yellow (1024)	10-14 days	ISP 5
19946	Ochre yellow (1024)	10-14 days	ISP 6
19946	Ochre yellow (1024)	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19946		ISP 2
19946		ISP 3
19946		ISP 4
19946		ISP 5
19946		ISP 6
19946		ISP 7

Multimedia

@ref:	10847
multimedia content:	DSM_43179.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43179.jpg
caption:	Medium 83 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
19946	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19946	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19946	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19946	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19946	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19946	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
10847	GYM+S MEDIUM (DSMZ Medium 214)	Medium recipe at MediaDive	Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10847	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10847	positive	growth	28
19946	positive	optimum	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.133

Compound production

19946

CompoundLipopeptide antibiotic complex TAN 1511

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19946	NaCl	positive	maximum	2.5 %

Observation

67770

Observationquinones: MK-9(H₂), MK-9(III,VIII-H₄), MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68368	gelatinase	+		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68382	trypsin	+	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19946	-	+	-	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19946	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	+	-	-	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10847	soil
67770	Alluvial paddy field soil	Aikawa, Yamanashi Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence X89935 (>99% sequence identity) for Streptosporangium from Microbeatlas

Aquatic Samples	6
Soil Samples	220
Animal Samples	12
Plant Samples	13
Total Samples	251

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10847	1	Risk group (German classification) According to TRBA 466
19946	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM72107v1 assembly for Streptosporangium amethystogenes NRRL B-2639	contig	GCA_000721075	2002.3	2772190748	2002	26.27

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Streptosporangium amethystogenes subsp. amethystogenes 16S rRNA gene, strain DSM 43179T	X89935	1449		698417
20218	Streptosporangium amethystogenes subsp. amethystogenes 16S-23S ribosomal RNA spacer region	AF004010	389		698417

GC content

@ref	GC-content (mol%)	Method
67770	69.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM72107v1 assembly for Streptosporangium amethystogenes NRRL B-2639
NCBI: GCA_000721075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.13	no
125439	gram_stain	BacteriaNetⓘ	positive	97.69	no
125439	motility	BacteriaNetⓘ	no	91.33	no
125439	spore_formation	BacteriaNetⓘ	yes	66.35	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptosporangium amethystogenes NRRL B-2639
NCBI: GCA_000721075.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.11	no
125438	anaerobic	anaerobicⓘ	no	87.83	no
125438	aerobic	aerobicⓘ	yes	86.76	no
125438	spore-forming	spore-formingⓘ	yes	87.84	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	74.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Isolation and evaluation of proteolytic actinomycete isolates as novel inducers of pearl millet downy mildew disease protection.	Jogaiah S, Kurjogi M, Govind SR, Huntrike SS, Basappa VA, Tran LS.	Sci Rep	10.1038/srep30789	2016
	The muraminomicin biosynthetic gene cluster and enzymatic formation of the 2-deoxyaminoribosyl appendage.	Chi X, Baba S, Tibrewal N, Funabashi M, Nonaka K, Van Lanen SG.	Medchemcomm	10.1039/c2md20245j	2013
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Streptosporangium nanhuense sp. nov., a novel actinomycete isolated from soil.	He H, Zhang X, Wang H, Liu C, Wang S, Zhao J, Yuan J, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0162-z	2014

References

#10847	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43179
#19946	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptosporangium amethystogenes subsp. amethystogenes (DSM 43179, ATCC 33327, CBS 430.61)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000721075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

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