Arboricoccus pini (UCCCB43, CIP 110763, LMG 27745)

Name: Arboricoccus pini (UCCCB43, CIP 110763, LMG 27745)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166088

Type strain

Strain Designation B29T1

Culture col. no. UCCCB43 CIP 110763 LMG 27745 B29T1

NCBI tax ID(s) 1963835

Special Collections CIP UCCCB

Links

Arboricoccus pini B29T1 is a mesophilic, Gram-negative, motile prokaryote that was isolated from Wood of the trunk of Pinus pinaster.

Gram-negative motile oval-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 413884

LMG 27745,CIP 110763

@ref 20215

Last LPSN update 2025-12-16 10:09:49

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Geminicoccaceae

Genus Arboricoccus

Species Arboricoccus pini

Full scientific name Arboricoccus pini corrig. Proença et al. 2018

Synonyms (1)

Arboriscoccus pini

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125439	negative			95.6
121835	negative	oval-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
121835	CIP Medium 407		Medium recipe at CIP
121835	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67772	positive	optimum	26-30	mesophilic
67772	positive	minimum	15	psychrophilic
67772	positive	maximum	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	8.5	alkaliphile
67772	positive	minimum	5.5
67772	positive	optimum	6.0-7.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	90.6

Spore formation

@ref	Spore formation	Confidence
125439		97

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
67772	Wood of the trunk of Pinus pinaster	2009	Coimbra, Avô	Portugal	PRT	Europe	40.2833	-7.9 40.2833/-7.9
121835	Plant, Pine tree		Avô, Coimbra, Portugal	Portugal	PRT	Europe			2009

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
67772	1
121835	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67772	IMG-taxon 2693429500 annotated assembly for Arboricoccus pini B29T1	contig	GCA_900187945	1963835.3	2693429500	1963835	73.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67772	Arboricoccus pini strain B29T1 16S ribosomal RNA gene, partial sequence	KY367357	1461		1963835

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arboricoccus pini B29T1
NCBI: GCA_900187945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	yes	50.30	no
125439	gram_stain	BacteriaNetⓘ	negative	95.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.	Proenca DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV	Syst Appl Microbiol	10.1016/j.syapm.2017.11.006	2017
Phylogeny	Geminicoccus flavidas sp. nov. and Geminicoccus harenae sp. nov., two IAA-producing novel rare bacterial species inhabiting desert biological soil crusts.	Jiang ZM, Deng Y, Han XF, Su J, Wang H, Yu LY, Zhang YQ	Front Microbiol	10.3389/fmicb.2022.1034816	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#121835	Collection of Institut Pasteur ; Curators of the CIP; CIP 110763
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arboricoccus pini (UCCCB43, CIP 110763, LMG 27745)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900187945

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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