Name: Streptosporangium pseudovulgare S2-32
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16588

Type strain:

Species: Streptosporangium pseudovulgare

Strain Designation: S2-32

Culture col. no.: DSM 43181, ATCC 27100, CBS 881.70, KCC A-0115, JCM 3115, BCRC 12465, CBS 801.70, CGMCC 4.1346, CGMCC 4.2108, IFM 1275, IFO 13991, IMET 9017, IMSNU 20327, KCTC 9239, MTCC 1050, NBRC 13991

Strain history: KCC A-0115 <-- H. Nonomura S₂-32.

NCBI tax ID(s): 35765 (species)

SI-ID 38810

ATCC 27100, DSM 43181, JCM 3115, CCRC 12465, IFO 13991, IMET 9017, CBS 881.70, CBS 801.70, KCTC 9239, CBS 811.70, AS 4.1346, NBRC 13991, BCRC 12465, CGMCC 4.2108, CGMCC 4.1346

Other strains from Streptosporangium pseudovulgare

S. pseudovulgare ST033552(HKI), GT20051133, HKI ...

Section

Streptosporangium pseudovulgare S2-32 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Streptosporangium*
	Species	**Streptosporangium pseudovulgare**
	Full Scientific Name (LPSN)	Streptosporangium pseudovulgare Nonomura and Ohara 1969 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.209

[Ref.: #19557]	Colony color	Orange
[Ref.: #19557]	Incubation period	10-14 days
[Ref.: #19557]	Cultivation medium used	ISP 2

[Ref.: #19557]	Colony color	Beige
[Ref.: #19557]	Incubation period	10-14 days
[Ref.: #19557]	Cultivation medium used	ISP 3

[Ref.: #19557]	Colony color	Beige
[Ref.: #19557]	Incubation period	10-14 days
[Ref.: #19557]	Cultivation medium used	ISP 4

[Ref.: #19557]	Colony color	Pink
[Ref.: #19557]	Incubation period	10-14 days
[Ref.: #19557]	Cultivation medium used	ISP 7

[Ref.: #19557]	Incubation period	10-14 days
[Ref.: #19557]	Cultivation medium used	ISP 5

[Ref.: #19557]	Incubation period	10-14 days
[Ref.: #19557]	Cultivation medium used	ISP 6

[Ref.: #19557]	Multicellular complex forming ability	yes
[Ref.: #19557]	Multicellular complex name	Aerial Mycelium
[Ref.: #19557]	Multicellular complex color	White
[Ref.: #19557]	Medium Name (multicellularity)	ISP 2

[Ref.: #19557]	Multicellular complex forming ability	yes
[Ref.: #19557]	Multicellular complex name	Aerial Mycelium
[Ref.: #19557]	Multicellular complex color	White
[Ref.: #19557]	Medium Name (multicellularity)	ISP 3

[Ref.: #19557]	Multicellular complex forming ability	yes
[Ref.: #19557]	Multicellular complex name	Aerial Mycelium
[Ref.: #19557]	Multicellular complex color	White
[Ref.: #19557]	Medium Name (multicellularity)	ISP 4

[Ref.: #19557]	Multicellular complex forming ability	yes
[Ref.: #19557]	Multicellular complex name	Aerial Mycelium
[Ref.: #19557]	Multicellular complex color	White
[Ref.: #19557]	Medium Name (multicellularity)	ISP 5

[Ref.: #19557]	Multicellular complex forming ability	no
[Ref.: #19557]	Medium Name (multicellularity)	ISP 6

[Ref.: #19557]	Multicellular complex forming ability	yes
[Ref.: #19557]	Multicellular complex name	Aerial Mycelium
[Ref.: #19557]	Multicellular complex color	White
[Ref.: #19557]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

GYM+S MEDIUM (DSMZ Medium 214)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #10849]	growth	37 °C
[Ref.: #19557]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10849]	Temperature range	mesophilic
[Ref.: #19557]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19557]	Spore description	Spore surface: smooth, sporangia: +
[Ref.: #19557]	Type of spore	spore
[Ref.: #19557]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19557]		NaCl		maximum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-9(III,VIII-H₄), MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19557]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19557]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19557]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19557]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19557]	mannitol ChEBI	+
[Ref.: #19557]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19557]	raffinose ChEBI	+
[Ref.: #19557]	rhamnose ChEBI	+
[Ref.: #19557]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19557]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19557]	409	-	+	+	+	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19557]	398	not determinedn.d.	+	-	+	-	+	+	-	+	+	+	+	-	+	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10849]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10849]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19557]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	S.pseudovulgare gene for 16S ribosomal RNA	X70428	1367	ENA	35765 tax ID	*
[Ref.: #20218]	S.pseudovulgare DNA for 16S ribosomal RNA gene	X89946	1444	ENA	35765 tax ID	*
[Ref.: #20218]	Streptosporangium pseudovulgare 16S-23S ribosomal RNA spacer region	AF004013	458	ENA	35765 tax ID	*
[Ref.: #20218]	Streptosporangium pseudovulgare 16S rRNA gene	U48995	1412	ENA	35765 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptosporangium pseudovulgare JCM 3115	GCA_014648055	scaffold	GenBank	35765 tax ID	*
[Ref.: #66792]	Streptosporangium pseudovulgare strain JCM 3115	35765.3	wgs	PATRIC	35765 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptosporangium pseudovulgare JCM 3115 NCBI: GCA_014648055.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptosporangium pseudovulgare JCM 3115 NCBI: GCA_014648055.1
[Ref.: #69480]	flagellated	no	97.878	no
[Ref.: #69480]	gram-positive	yes	91.257	no
[Ref.: #69480]	anaerobic	no	98.877	no
[Ref.: #69480]	aerobic	yes	92.127	no
[Ref.: #69480]	halophile	no	92.337	no
[Ref.: #69480]	spore-forming	yes	95.035	no
[Ref.: #69480]	thermophile	no	98.646	yes
[Ref.: #69480]	glucose-util	yes	87.687	yes
[Ref.: #69480]	motile	no	92.27	no
[Ref.: #69480]	glucose-ferment	no	91.306	no

Availability in culture collections External links

[Ref.: #10849]

Culture collection no.

DSM 43181, ATCC 27100, CBS 881.70, KCC A-0115, JCM 3115, BCRC 12465, CBS 801.70, CGMCC 4.1346, CGMCC 4.2108, IFM 1275, IFO 13991, IMET 9017, IMSNU 20327, KCTC 9239, MTCC 1050, NBRC 13991

[Ref.: #85615]

SI-ID 38810

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptosporangium becharense sp. nov., an actinobacterium isolated from desert soil.	Chaabane Chaouch F, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.001077	2016	*
Phylogeny	Streptosporangium sandarakinum sp. nov.	Kampfer P, Glaeser SP, Grun-Wollny I, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.048504-0	2012	*
Phylogeny	Streptosporangium anatoliense sp. nov., isolated from soil in Turkey.	Sazak A, Sahin N, Camas M, Guven K, Cetin D, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-012-9735-x	2012	*

References

#10849

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43181

#19557

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85615

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38810.1 )

* These data were automatically processed and therefore are not curated

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Streptosporangium pseudovulgare JCM 3115

Streptosporangium pseudovulgare JCM 3115

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