Name: Planotetraspora phitsanulokensis A-T 1383
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16585

Type strain:

Species: Planotetraspora phitsanulokensis

Strain Designation: A-T 1383

Culture col. no.: DSM 45571, BCC 26045, NBRC 104273, JCM 17937

Strain history: BCC 26045 <-- C. Suriyachadkun A-T 1383.

NCBI tax ID(s): 575192 (species)

SI-ID 400839

DSM 45571

Section

Planotetraspora phitsanulokensis A-T 1383 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
ovoid-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Planotetraspora*
	Species	**Planotetraspora phitsanulokensis**
	Full Scientific Name (LPSN)	Planotetraspora phitsanulokensis Suriyachadkun et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29608]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29608]	Cell length	0.8-3 µm

[Ref.: #29608]	Cell width	0.4-1 µm

[Ref.: #29608]	Cell shape	ovoid-shaped

[Ref.: #29608]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.448

[Ref.: #21400]	Colony color	Sand yellow (1002)
[Ref.: #21400]	Incubation period	10-14 days
[Ref.: #21400]	Cultivation medium used	ISP 2

[Ref.: #21400]	Colony color	Sand yellow (1002)
[Ref.: #21400]	Incubation period	10-14 days
[Ref.: #21400]	Cultivation medium used	ISP 4

[Ref.: #21400]	Colony color	Sand yellow (1002)
[Ref.: #21400]	Incubation period	10-14 days
[Ref.: #21400]	Cultivation medium used	ISP 5

[Ref.: #21400]	Colony color	Ivory(1014)
[Ref.: #21400]	Incubation period	10-14 days
[Ref.: #21400]	Cultivation medium used	ISP 7

[Ref.: #21400]	Colony color	Sand yellow (1002)
[Ref.: #21400]	Incubation period	10-14 days
[Ref.: #21400]	Cultivation medium used	Suter with tyrosine

[Ref.: #21400]	Colony color	Ivory (1014)
[Ref.: #21400]	Incubation period	10-14 days
[Ref.: #21400]	Cultivation medium used	Suter without tyrosine

[Ref.: #21400]	Incubation period	10-14 days
[Ref.: #21400]	Cultivation medium used	ISP 3

[Ref.: #29608]

Pigment production

[Ref.: #21400]	Multicellular complex forming ability	no
[Ref.: #21400]	Medium Name (multicellularity)	ISP 2

[Ref.: #21400]	Multicellular complex forming ability	no
[Ref.: #21400]	Medium Name (multicellularity)	ISP 3

[Ref.: #21400]	Multicellular complex forming ability	no
[Ref.: #21400]	Medium Name (multicellularity)	ISP 4

[Ref.: #21400]	Multicellular complex forming ability	yes
[Ref.: #21400]	Multicellular complex name	Aerial Mycelium
[Ref.: #21400]	Multicellular complex color	Signal white (9003)
[Ref.: #21400]	Medium Name (multicellularity)	ISP 5

[Ref.: #21400]	Multicellular complex forming ability	no
[Ref.: #21400]	Medium Name (multicellularity)	ISP 7

[Ref.: #21400]	Multicellular complex forming ability	no
[Ref.: #21400]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21400]	Multicellular complex forming ability	no
[Ref.: #21400]	Medium Name (multicellularity)	Suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17663]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #17663]

Culture medium growth

[Ref.: #17663]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17663]

Culture medium composition

expand / minimize

[Ref.: #17663]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #17663]

Culture medium growth

[Ref.: #17663]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #21400]

Culture medium

ISP 2

[Ref.: #21400]

Culture medium growth

[Ref.: #21400]

Culture medium composition

expand / minimize

[Ref.: #21400]

Culture medium

ISP 3

[Ref.: #21400]

Culture medium growth

[Ref.: #21400]

Culture medium composition

expand / minimize

[Ref.: #21400]

Culture medium

ISP 4

[Ref.: #21400]

Culture medium growth

[Ref.: #21400]

Culture medium composition

expand / minimize

[Ref.: #21400]

Culture medium

ISP 5

[Ref.: #21400]

Culture medium growth

[Ref.: #21400]

Culture medium composition

expand / minimize

[Ref.: #21400]

Culture medium

ISP 7

[Ref.: #21400]

Culture medium growth

[Ref.: #21400]

Culture medium composition

expand / minimize

[Ref.: #21400]

Culture medium

Suter with tyrosine

[Ref.: #21400]

Culture medium growth

[Ref.: #21400]

Culture medium composition

expand / minimize

[Ref.: #21400]

Culture medium

Suter without tyrosine

[Ref.: #21400]

Culture medium growth

[Ref.: #21400]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17663]	growth	28 °C
[Ref.: #29608]	growth	25-30 °C
[Ref.: #29608]	optimum	25-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #17663]	Temperature range	mesophilic
[Ref.: #29608]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29608]			optimum	7
[Ref.: #29608]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29608]

Oxygen tolerance

aerobe

[Ref.: #29608]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt		Salt conc.
[Ref.: #21400]	NaCl	maximum	10	%
[Ref.: #29608]	NaCl	growth	0-1	%
[Ref.: #29608]	NaCl	optimum	0-1	%

[Ref.: #29608]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21400]	arabinose ChEBI	+
[Ref.: #29608]	cellobiose ChEBI	+	carbon source
[Ref.: #21400]	cellulose ChEBI	-
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21400]	fructose ChEBI	+
[Ref.: #29608]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21400]	glucose ChEBI	+
[Ref.: #29608]	glucose ChEBI	+	carbon source
[Ref.: #29608]	glycerol ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #29608]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29608]	mannitol ChEBI	+	carbon source
[Ref.: #21400]	mannose ChEBI	+
[Ref.: #21400]	myo-inositol ChEBI	+
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #21400]	raffinose ChEBI	-
[Ref.: #21400]	rhamnose ChEBI	+
[Ref.: #21400]	sucrose ChEBI	+
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21400]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21400]	526	-	not determinedn.d.	-	-	-	-	-	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	not determinedn.d.	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21400]	1041	not determinedn.d.	-	+/-	+	+	-	-	-	-	+	-	+	-	+	-	+	+	+/-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17663]	Sample type/isolated from	soil
[Ref.: #17663]	Country	Thailand
[Ref.: #17663]	Country ISO 3 Code	THA
[Ref.: #17663]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Forest soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nakhon Thai District, Phitsanulok Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17663]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17663]	Planotetraspora phitsanulokensis strain A-T 1383 16S ribosomal RNA gene, partial sequence	FJ426332	1468	ENA	575192 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planotetraspora phitsanulokensis NBRC 104273	GCA_016863295	contig	GenBank	575192 tax ID	*
[Ref.: #66792]	Planotetraspora phitsanulokensis strain NBRC 104273	575192.3	wgs	PATRIC	575192 tax ID	*

[Ref.: #17663]	GC-content	70.9 mol%
[Ref.: #29608]	GC-content	71 mol%
[Ref.: #67770]	GC-content	70.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planotetraspora phitsanulokensis strain NBRC 104273 PATRIC: 575192.3
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planotetraspora phitsanulokensis strain NBRC 104273 PATRIC: 575192.3
[Ref.: #69480]	gram-positive	yes	87.531	yes
[Ref.: #69480]	anaerobic	no	98.807	yes
[Ref.: #69480]	halophile	no	92.994	no
[Ref.: #69480]	spore-forming	yes	93.607	yes
[Ref.: #69480]	glucose-util	yes	89.853	yes
[Ref.: #69480]	thermophile	no	97.594	no
[Ref.: #69480]	motile	no	93.533	no
[Ref.: #69480]	flagellated	no	97.415	no
[Ref.: #69480]	aerobic	yes	89.762	yes
[Ref.: #69480]	glucose-ferment	no	91.13	yes

Availability in culture collections External links

[Ref.: #17663]

Culture collection no.

DSM 45571, BCC 26045, NBRC 104273, JCM 17937

[Ref.: #85612]

SI-ID 400839

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planotetraspora kaengkrachanensis sp. nov. and Planotetraspora phitsanulokensis sp. nov., isolated from soil.	Suriyachadkun C, Chunhametha S, Thawai C, Tamura T, Potacharoen W, Kirtikara K, Sanglier JJ, Kitpreechavanich V	Int J Syst Evol Microbiol	10.1099/ijs.0.016899-0	2009	*

References

#17663

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45571

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21400

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29608

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25998 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85612

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400839.1 )

#25998

IJSEM 2076 2010 ( DOI 10.1099/ijs.0.016899-0 , PubMed 19837735 )

* These data were automatically processed and therefore are not curated

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Planotetraspora phitsanulokensis strain NBRC 104273

Planotetraspora phitsanulokensis strain NBRC 104273

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