Planotetraspora thailandica (DSM 45400, BCC 21825, NBRC 104271)

Name: Planotetraspora thailandica (DSM 45400, BCC 21825, NBRC 104271)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16583

Type strain

Culture col. no. DSM 45400 BCC 21825 NBRC 104271 JCM 16140

NCBI tax ID(s) 487172

Special Collections DSMZ JCM Literature strains

History <- C Suriyachadkun, BIOTEC Culture Collection (BCC); BCC 21825 C. Suriyachadkun BCC 21825.

Links

Planotetraspora thailandica DSM 45400 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397307

NBRC 104271,JCM 16140,DSM 45400

@ref 20215

Last LPSN update 2026-02-09 11:22:00

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Planotetraspora

Species Planotetraspora thailandica

Full scientific name Planotetraspora thailandica Suriyachadkun et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
28985	positive	rod-shaped
125439	positive			97.8

Pigmentation

28985

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16603	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16603	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
16603	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16603	positive	growth	28
28985	positive	growth	25-37
28985	positive	optimum	27.5
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
28985	aerobe
125439	obligate aerobe	98.4

Spore formation

28985

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
28985	NaCl	positive	growth	<1 %

Observation

@ref	Observation
28985	aggregates in clumps
67770	quinones: MK-9(H₄), MK-9(H₈), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28985	17057 ChEBI	cellobiose	+	carbon source
28985	28757 ChEBI	fructose	+	carbon source
28985	28260 ChEBI	galactose	+	carbon source
28985	17234 ChEBI	glucose	+	carbon source
28985	17754 ChEBI	glycerol	+	carbon source
28985	17716 ChEBI	lactose	+	carbon source
28985	29864 ChEBI	mannitol	+	carbon source
28985	37684 ChEBI	mannose	+	carbon source
28985	28053 ChEBI	melibiose	+	carbon source
28985	16634 ChEBI	raffinose	+	carbon source
28985	26546 ChEBI	rhamnose	+	carbon source
28985	17814 ChEBI	salicin	+	carbon source
28985	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16603	soil		Thailand	THA	Asia
67770	Tropical lowland rainforest soil near a hot spring	Krabi Province	Thailand	THA	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16603	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686333v1 assembly for Planotetraspora thailandica NBRC 104271	contig	GCA_016863335	487172.3	2994638823	487172	41.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16603	Planotetraspora thailandica gene for 16S rRNA, partial sequence	AB370244	1495		487172

GC content

@ref	GC-content (mol%)	Method
16603	71.1
67770	71.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Planotetraspora thailandica NBRC 104271
NCBI: GCA_016863335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	53.30	no
125439	motility	BacteriaNetⓘ	no	79.90	no
125439	gram_stain	BacteriaNetⓘ	positive	97.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Planotetraspora thailandica strain NBRC 104271
PATRIC: 487172.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.99	yes
125438	anaerobic	anaerobicⓘ	no	89.86	yes
125438	spore-forming	spore-formingⓘ	yes	89.85	yes
125438	aerobic	aerobicⓘ	yes	89.92	yes
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	86.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planotetraspora thailandica sp. nov., isolated from soil in Thailand.	Suriyachadkun C, Chunhametha S, Thawai C, Tamura T, Potacharoen W, Kirtikara K, Sanglier JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.003228-0	2009

References

#16603	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45400
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25418	IJSEM 992 2009 ( DOI 10.1099/ijs.0.003228-0 , PubMed 19406780 )
#28985	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25418
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Planotetraspora thailandica (DSM 45400, BCC 21825, NBRC 104271)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016863335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media