Name: Planomonospora parontospora B-677
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16576

Type strain:

Species: Planomonospora parontospora

Strain Designation: B-677

Culture col. no.: DSM 43177, ATCC 23863, IAM 14289, JCM 3093, KCC A-0093, BCRC 13425, CBS 117.69, CGMCC 4.1205, IFM 1246, IFO 13880, IMET 9030, IMSNU 20109, KACC 20019, KCTC 9175, KCTC 9473, NBIMCC 1472, NBRC 13880, NRRL B-8120, RIA 939, VKM Ac-664

Strain history: KCC A-0093 <-- J. E. Thiemann B/677.

NCBI tax ID(s): 58119 (species)

SI-ID 44695

ATCC 23863, DSM 43177, IAM 14289, JCM 3093, CCRC 13425, IFO 13880, IMET 9030, NRRL B-8120, CBS 117.69, KCTC 9175, KCTC 9473, NBRC 13880, BCRC 13425, KACC 20019, NBIMCC 1472, CGMCC 4.1205, VKM Ac-664

Section

Planomonospora parontospora B-677 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Planomonospora*
	Species	**Planomonospora parontospora**
	Full Scientific Name (LPSN)	Planomonospora parontospora Thiemann et al. 1967 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19945]	Colony color	Beige
[Ref.: #19945]	Incubation period	10-14 days
[Ref.: #19945]	Cultivation medium used	ISP 2

[Ref.: #19945]	Colony color	Beige
[Ref.: #19945]	Incubation period	10-14 days
[Ref.: #19945]	Cultivation medium used	ISP 3

[Ref.: #19945]	Colony color	Beige
[Ref.: #19945]	Incubation period	10-14 days
[Ref.: #19945]	Cultivation medium used	ISP 4

[Ref.: #19945]	Colony color	Beige
[Ref.: #19945]	Incubation period	10-14 days
[Ref.: #19945]	Cultivation medium used	ISP 5

[Ref.: #19945]	Colony color	Beige
[Ref.: #19945]	Incubation period	10-14 days
[Ref.: #19945]	Cultivation medium used	ISP 6

[Ref.: #19945]	Colony color	White
[Ref.: #19945]	Incubation period	10-14 days
[Ref.: #19945]	Cultivation medium used	ISP 7

[Ref.: #19945]	Multicellular complex forming ability	yes
[Ref.: #19945]	Multicellular complex name	Aerial Mycelium
[Ref.: #19945]	Multicellular complex color	White
[Ref.: #19945]	Medium Name (multicellularity)	ISP 2

[Ref.: #19945]	Multicellular complex forming ability	yes
[Ref.: #19945]	Multicellular complex name	Aerial Mycelium
[Ref.: #19945]	Multicellular complex color	White
[Ref.: #19945]	Medium Name (multicellularity)	ISP 3

[Ref.: #19945]	Multicellular complex forming ability	no
[Ref.: #19945]	Medium Name (multicellularity)	ISP 4

[Ref.: #19945]	Multicellular complex forming ability	no
[Ref.: #19945]	Medium Name (multicellularity)	ISP 5

[Ref.: #19945]	Multicellular complex forming ability	no
[Ref.: #19945]	Medium Name (multicellularity)	ISP 6

[Ref.: #19945]	Multicellular complex forming ability	no
[Ref.: #19945]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10845]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #10845]

Culture medium growth

[Ref.: #10845]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10845]

Culture medium composition

expand / minimize

[Ref.: #19945]

Culture medium

ISP 2

[Ref.: #19945]

Culture medium growth

[Ref.: #19945]

Culture medium composition

expand / minimize

[Ref.: #19945]

Culture medium

ISP 3

[Ref.: #19945]

Culture medium growth

[Ref.: #19945]

Culture medium composition

expand / minimize

[Ref.: #19945]

Culture medium

ISP 4

[Ref.: #19945]

Culture medium growth

[Ref.: #19945]

Culture medium composition

expand / minimize

[Ref.: #19945]

Culture medium

ISP 5

[Ref.: #19945]

Culture medium growth

[Ref.: #19945]

Culture medium composition

expand / minimize

[Ref.: #19945]

Culture medium

ISP 6

[Ref.: #19945]

Culture medium growth

[Ref.: #19945]

Culture medium composition

expand / minimize

[Ref.: #19945]

Culture medium

ISP 7

[Ref.: #19945]

Culture medium growth

[Ref.: #19945]

Culture medium composition

expand / minimize

[Ref.: #10845]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10845]

Culture medium growth

[Ref.: #10845]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10845]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10845]	growth	28 °C
[Ref.: #19945]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10845]	Temperature range	mesophilic
[Ref.: #19945]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.448

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19945]		NaCl		maximum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-9(H₂), MK-9, MK-9(III,VIII-H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19945]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19945]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19945]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19945]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19945]	mannitol ChEBI	+
[Ref.: #19945]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19945]	raffinose ChEBI	-
[Ref.: #19945]	rhamnose ChEBI	+
[Ref.: #19945]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19945]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19945]	553	-	+	+	+	+	-	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19945]	749	not determinedn.d.	+	-	+	-	+	+	+	+	+	+	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10845]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Atacama
[Ref.: #67770]	Country	Chile
[Ref.: #67770]	Country ISO 3 Code	CHL
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D85495 (>99% sequence identity) for Planomonospora from Microbeatlas

Aquatic Samples	8
Soil Samples	326
Animal Samples	29
Plant Samples	23
Total Samples	386

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10845]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19945]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Planomonospora parontospora gene for 16S ribosomal RNA, partial sequence	D85495	1478	ENA	58119 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planomonospora parontospora subsp. parontospora NBRC 13880	GCA_016863215	contig	GenBank	97194 tax ID	*
[Ref.: #66792]	Planomonospora parontospora strain JCM 3093	58119.3	wgs	PATRIC	58119 tax ID	*
[Ref.: #66792]	Planomonospora parontospora subsp. parontospora strain NBRC 13880	97194.3	wgs	PATRIC	97194 tax ID	*

[Ref.: #67770]

GC-content

72 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planomonospora parontospora subsp. parontospora strain NBRC 13880 PATRIC: 97194.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planomonospora parontospora strain JCM 3093 PATRIC: 58119.3
[Ref.: #69480]	gram-positive	yes	89.47	no
[Ref.: #69480]	anaerobic	no	98.823	no
[Ref.: #69480]	halophile	no	94.003	no
[Ref.: #69480]	spore-forming	yes	93.455	no
[Ref.: #69480]	glucose-util	yes	90.668	no
[Ref.: #69480]	thermophile	no	96.81	no
[Ref.: #69480]	flagellated	no	88.816	no
[Ref.: #69480]	aerobic	yes	87.306	no
[Ref.: #69480]	motile	yes	64.647	no
[Ref.: #69480]	glucose-ferment	no	92.238	no

Availability in culture collections External links

[Ref.: #10845]

Culture collection no.

DSM 43177, ATCC 23863, IAM 14289, JCM 3093, KCC A-0093, BCRC 13425, CBS 117.69, CGMCC 4.1205, IFM 1246, IFO 13880, IMET 9030, IMSNU 20109, KACC 20019, KCTC 9175, KCTC 9473, NBIMCC 1472, NBRC 13880, NRRL B-8120, RIA 939, VKM Ac-664

[Ref.: #85603]

SI-ID 44695

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planomonospora algeriensis sp. nov., an actinobacterium isolated from a Saharan soil of Algeria.	Chaabane Chaouch F, Bouras N, Mokrane S, Bouznada K, Zitouni A, Potter G, Sproer C, Klenk HP, Sabaou N	Antonie Van Leeuwenhoek	10.1007/s10482-016-0795-1	2016	*

References

#10845

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43177

#19945

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85603

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44695.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Planomonospora parontospora subsp. parontospora in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Planomonospora parontospora subsp. parontospora strain NBRC 13880

Planomonospora parontospora strain JCM 3093

Change proposal

Change proposal