Name: Treponema socranskii subsp. paredis JCM 8156
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165757

Type strain:

Species: Treponema socranskii subsp. paredis

Culture col. no.: JCM 8156, ATCC 35535, VPI D46CPE1

Strain history: ATCC 35535 <-- R. M. Smibert et al..

NCBI tax ID(s): 1125701 (strain), 69714 (subspecies)

SI-ID 41143

ATCC 35535, JCM 8156

Section

Treponema socranskii subsp. paredis JCM 8156 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Human oral cavity.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Treponemataceae*
	Genus	*Treponema*
	Species	**Treponema socranskii subsp. paredis**
	Full Scientific Name (LPSN)	Treponema socranskii subsp. paredis Smibert et al. 1984

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.955

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %100

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.972
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC007111 (>99% sequence identity) for Treponema from Microbeatlas

Aquatic Samples	92
Soil Samples	63
Animal Samples	3375
Plant Samples	21
Total Samples	3551

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Treponema socranskii subsp. paredis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8156	LC007111	1498	ENA	69714 tax ID
[Ref.: #67770]	Treponema socranskii subsp. paredis 16S ribosomal RNA gene, partial sequence	AF033307	1479	ENA	69714 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Treponema socranskii subsp. paredis ATCC 35535	GCA_000413015	scaffold	GenBank	1125701 tax ID
[Ref.: #66792]	Treponema socranskii subsp. paredis ATCC 35535	1125701.3	wgs	PATRIC	1125701 tax ID	*
[Ref.: #66792]	Treponema socranskii paredis ATCC 35535	2541047001	draft	JGI IMG/M	1125701 tax ID	*

[Ref.: #67770]	GC-content	48.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	51 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Treponema socranskii subsp. paredis ATCC 35535 PATRIC: 1125701.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Treponema socranskii subsp. paredis ATCC 35535 PATRIC: 1125701.3
[Ref.: #69480]	motile	yes	80.323	no
[Ref.: #69480]	flagellated	no	88.252	no
[Ref.: #69480]	gram-positive	no	97.012	no
[Ref.: #69480]	anaerobic	yes	99.317	no
[Ref.: #69480]	aerobic	no	99.026	no
[Ref.: #69480]	halophile	no	77.516	no
[Ref.: #69480]	spore-forming	no	89.319	no
[Ref.: #69480]	thermophile	no	97.506	no
[Ref.: #69480]	glucose-util	yes	80.508	no
[Ref.: #69480]	glucose-ferment	yes	64.615	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8156, ATCC 35535, VPI D46CPE1

[Ref.: #114583]

SI-ID 41143

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114583

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41143.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Treponema socranskii subsp. paredis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Treponema socranskii subsp. paredis ATCC 35535

Treponema socranskii subsp. paredis ATCC 35535

Change proposal

Change proposal