Name: Treponema socranskii subsp. buccale JCM 8155
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165756

Type strain:

Species: Treponema socranskii subsp. buccale

Culture col. no.: JCM 8155, ATCC 35534, VPI D2B8

Strain history: ATCC 35534 <-- R. M. Smibert.

NCBI tax ID(s): 69713 (subspecies)

SI-ID 41142

ATCC 35534, JCM 8155

Section

Treponema socranskii subsp. buccale JCM 8155 is a mesophilic bacterium that was isolated from Subgingival crevice in a patient with moderate periodontal disease.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Treponemataceae*
	Genus	*Treponema*
	Species	**Treponema socranskii subsp. buccale**
	Full Scientific Name (LPSN)	Treponema socranskii subsp. buccale Smibert et al. 1984

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Subgingival crevice in a patient with moderate periodontal disease
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AF033305 (>99% sequence identity) for Treponema socranskii subclade from Microbeatlas

Aquatic Samples	68
Soil Samples	48
Animal Samples	3918
Plant Samples	30
Total Samples	4064

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Treponema socranskii subsp. buccale 16S ribosomal RNA gene, partial sequence	AF033305	1477	ENA	69713 tax ID
[Ref.: #67770]	Treponema socranskii subsp. buccale gene for 16S ribosomal RNA, partial sequence	AB910735	1498	ENA	69713 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Treponema socranskii subsp. buccale ATCC 35534	GCA_024181585	complete	GenBank	69713 tax ID	*

[Ref.: #67770]

GC-content

48.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Treponema socranskii subsp. buccale ATCC 35534 NCBI: GCA_024181585.1
[Ref.: #69480]	flagellated	no	88.852	no
[Ref.: #69480]	gram-positive	no	95.553	no
[Ref.: #69480]	anaerobic	yes	99.517	no
[Ref.: #69480]	aerobic	no	99.111	no
[Ref.: #69480]	halophile	no	84.704	no
[Ref.: #69480]	spore-forming	no	88.583	no
[Ref.: #69480]	motile	yes	76.846	no
[Ref.: #69480]	glucose-ferment	yes	71.696	no
[Ref.: #69480]	thermophile	no	93.677	yes
[Ref.: #69480]	glucose-util	yes	82.911	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8155, ATCC 35534, VPI D2B8

[Ref.: #114582]

SI-ID 41142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Common and specific antigens of several treponemes detected by polyclonal antisera against major cellular proteins.	Nakamura Y, Umemoto T, Nakatani Y, Namikawa I, Wadood A	Oral Microbiol Immunol	10.1111/j.1399-302x.1993.tb00576.x	1993	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114582

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41142.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Treponema socranskii subsp. buccale in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Treponema socranskii subsp. buccale ATCC 35534

Change proposal

Change proposal