Lacticaseibacillus casei (JCM 8129, BCRC 17487, NCDO 173)

Name: Lacticaseibacillus casei (JCM 8129, BCRC 17487, NCDO 173)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165741

Type strain

Culture col. no. JCM 8129 BCRC 17487 NCDO 173

NCBI tax ID(s) 1582

Special Collections JCM

History NCFB 173 <-- P. P. Tittsler C27.

Links

Lacticaseibacillus casei JCM 8129 is a bacterium that was isolated from Milk products.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 54897

CCUG 34681,NCDO 173,JCM 8129,NCIMB 700173,BCRC 17487,CCRC 17487

@ref 20215

Last LPSN update 2026-02-09 11:40:10

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lacticaseibacillus

Species Lacticaseibacillus casei

Full scientific name Lacticaseibacillus casei (Orla-Jensen 1916) Zheng et al. 2020

Synonyms (2)

"Caseobacterium vulgare"
Lactobacillus casei

BacDive ID	Other strains from **Lacticaseibacillus casei** (10)	Type strain
6559	L. casei 03, 7, O3, CCUG 21451, IAM 12473, LMG 6904, ... (type strain)
137569	L. casei pLZ15, CIP 109805
162697	L. casei JCM 20024, ATU L-29, IAM 1045
162859	L. casei JCM 20304, IAM 10062
163108	L. casei JCM 2120, ATCC 4913
165853	L. casei JCM 8608
165859	L. casei JCM 8615
165865	L. casei JCM 8621
165892	L. casei JCM 8648
165915	L. casei JCM 8677

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	91
125438	92.55	positive
125439	91.5	positive

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	97.6

Spore formation

@ref	Spore formation	Confidence
125439		94.2

Isolation, sampling and environmental information

Isolation

67770

Sample typeMilk products

Taxonmaps

69479

Global distribution of 16S sequence D86518 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	2397
Soil Samples	1801
Animal Samples	39363
Plant Samples	883
Total Samples	44444

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	ASM579599v1 assembly for Lacticaseibacillus casei BCRC 17487	contig	GCA_005795995	1582.215	1582	45.07

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Lactobacillus casei gene for 16S ribosomal RNA, partial sequence	D86518	1522	1582
124043	Lactobacillus casei genes for 16S rRNA, 16S-23S internal transcribed spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain:JCM 8129.	AB237518	577	1582
124043	Lactobacillus casei genes for 16S rRNA, 16S-23S internal transcribed spacer, 23S rRNA, partial sequence, strain:JCM 8129.	AB237519	364	1582
124043	Lactobacillus casei gene for 16S rRNA, partial sequence, strain: JCM 8129.	AB289058	689	1582
124043	Lacticaseibacillus casei JCM 8129 gene for 16S rRNA, partial sequence.	LC638733	1505	1582
124043	Lactobacillus casei strain BCRC 17487 16S ribosomal RNA gene, partial sequence.	MN038016	1467	1582

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacticaseibacillus casei BCRC 17487
NCBI: GCA_005795995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.20	no
125439	motility	BacteriaNetⓘ	no	84.60	no
125439	gram_stain	BacteriaNetⓘ	positive	91.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	97.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus casei strain BCRC 17487
PATRIC: 1582.215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.55	no
125438	anaerobic	anaerobicⓘ	no	85.12	no
125438	spore-forming	spore-formingⓘ	no	83.99	no
125438	aerobic	aerobicⓘ	no	89.82	no
125438	thermophilic	thermophileⓘ	no	95.50	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Occurrence and genetic diversity of prophage sequences identified in the genomes of L. casei group bacteria.	Jarocki P, Komon-Janczara E, Mlodzinska A, Sadurski J, Kolodzinska K, Laczmanski L, Panek J, Frac M.	Sci Rep	10.1038/s41598-023-35823-z	2023
Phylogeny	Molecular Routes to Specific Identification of the Lactobacillus Casei Group at the Species, Subspecies and Strain Level.	Jarocki P, Komon-Janczara E, Glibowska A, Dworniczak M, Pytka M, Korzeniowska-Kowal A, Wzorek A, Kordowska-Wiater M.	Int J Mol Sci	10.3390/ijms21082694	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacticaseibacillus casei (JCM 8129, BCRC 17487, NCDO 173)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_005795995

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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