Name: Lacticaseibacillus casei JCM 8129
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165741

Type strain:

Species: Lacticaseibacillus casei

Culture col. no.: JCM 8129, BCRC 17487, NCDO 173

Strain history: NCFB 173 <-- P. P. Tittsler C27.

NCBI tax ID(s): 1582 (species)

SI-ID 54897

CCUG 34681, NCDO 173, JCM 8129, NCIMB 700173, BCRC 17487, CCRC 17487

Other strains from Lacticaseibacillus casei

L. casei 03, 7, O3, CCUG 21451, IAM 12473, ... (type strain)
L. casei pLZ15, CIP 109805
L. casei JCM 20024, ATU L-29, IAM 1045
L. casei JCM 20304, IAM 10062
L. casei JCM 2120, ATCC 4913
L. casei JCM 8608
L. casei JCM 8615
L. casei JCM 8621
L. casei JCM 8648
L. casei JCM 8677

Section

Lacticaseibacillus casei JCM 8129 is a mesophilic, Gram-positive bacterium that was isolated from Milk products.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lacticaseibacillus*
	Species	**Lacticaseibacillus casei**
	Full Scientific Name (LPSN)	Lacticaseibacillus casei (Orla-Jensen 1916) Zheng et al. 2020

	Synonym	Lactobacillus casei
	Synonym	"Caseobacterium* vulgare"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.759

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Milk products
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence D86518 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	2397
Soil Samples	1801
Animal Samples	39363
Plant Samples	883
Total Samples	44444

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus casei gene for 16S ribosomal RNA, partial sequence	D86518	1522	ENA	1582 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lacticaseibacillus casei BCRC 17487	GCA_005795995	contig	GenBank	1582 tax ID
[Ref.: #66792]	Lactobacillus casei strain BCRC 17487	1582.215	wgs	PATRIC	1582 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus casei strain BCRC 17487 PATRIC: 1582.215
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus casei strain BCRC 17487 PATRIC: 1582.215
[Ref.: #69480]	motile	no	93.938	no
[Ref.: #69480]	gram-positive	yes	94.061	no
[Ref.: #69480]	anaerobic	no	95.276	no
[Ref.: #69480]	aerobic	no	94.84	no
[Ref.: #69480]	halophile	yes	79.528	no
[Ref.: #69480]	spore-forming	no	91.118	no
[Ref.: #69480]	thermophile	no	98.643	yes
[Ref.: #69480]	glucose-util	yes	91.299	no
[Ref.: #69480]	flagellated	no	98.296	no
[Ref.: #69480]	glucose-ferment	yes	87.144	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8129, BCRC 17487, NCDO 173

[Ref.: #114569]

SI-ID 54897

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114569

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID54897.1 )

* These data were automatically processed and therefore are not curated

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Lactobacillus casei strain BCRC 17487

Lactobacillus casei strain BCRC 17487

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