Name: Lacticaseibacillus casei JCM 8129
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 165741

Type strain:

Species: Lacticaseibacillus casei

Culture col. no.: JCM 8129, BCRC 17487, NCDO 173

Strain history: NCFB 173 <-- P. P. Tittsler C27.

NCBI tax ID(s): 1582 (species)

SI-ID 54897

CCUG 34681, NCDO 173, JCM 8129, NCIMB 700173, BCRC 17487, CCRC 17487

Special Collections

Other strains from Lacticaseibacillus casei

Section

When using BacDive for research please cite our paper

Lacticaseibacillus casei JCM 8129 is a mesophilic bacterium that was isolated from Milk products.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lacticaseibacillus*
	Species	**Lacticaseibacillus casei**
	Full Scientific Name (LPSN)	Lacticaseibacillus casei (Orla-Jensen 1916) Zheng et al. 2020

	Synonym	Lactobacillus casei
	Synonym	"Caseobacterium* vulgare"*

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %92.55
[Ref.: #125439]	Gram stain	positive Confidence in %91.5

[Ref.: #125438]	Motility	no Confidence in %91

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

microaerophile Confidence in %97.6

[Ref.: #125439]

Ability of spore formation

no Confidence in %94.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Milk products
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence D86518 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	2397
Soil Samples	1801
Animal Samples	39363
Plant Samples	883
Total Samples	44444

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus casei gene for 16S ribosomal RNA, partial sequence	D86518	1522	GenBank ENA	1582 tax ID
[Ref.: #124043]	Lactobacillus casei genes for 16S rRNA, 16S-23S internal transcribed spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain:JCM 8129.	AB237518	577	GenBank ENA	1582 tax ID	*
[Ref.: #124043]	Lactobacillus casei genes for 16S rRNA, 16S-23S internal transcribed spacer, 23S rRNA, partial sequence, strain:JCM 8129.	AB237519	364	GenBank ENA	1582 tax ID	*
[Ref.: #124043]	Lactobacillus casei gene for 16S rRNA, partial sequence, strain: JCM 8129.	AB289058	689	GenBank ENA	1582 tax ID	*
[Ref.: #124043]	Lacticaseibacillus casei JCM 8129 gene for 16S rRNA, partial sequence.	LC638733	1505	GenBank ENA	1582 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lacticaseibacillus casei BCRC 17487	GCA_005795995	contig	GenBank ENA	1582 tax ID
[Ref.: #66792]	Lactobacillus casei strain BCRC 17487	1582.215	wgs	PATRIC	1582 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus casei strain BCRC 17487 PATRIC: 1582.215
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	92.55	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	85.122	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	83.993	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	89.815	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.5	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	91	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacticaseibacillus casei BCRC 17487 NCBI: GCA_005795995
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	94.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	84.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	91.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	97.6

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8129, BCRC 17487, NCDO 173

[Ref.: #114569]

SI-ID 54897

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#114569

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID54897.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Lactobacillus casei strain BCRC 17487

Lacticaseibacillus casei BCRC 17487

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