Name: Planobispora longispora Pb-1075
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16574

Type strain:

Species: Planobispora longispora

Strain Designation: Pb-1075

Culture col. no.: DSM 43041, ATCC 23867, CBS 115.69, IAM 14288, IFO 13879, IFO 13918, JCM 3092, KCC A-0092, NBRC 13879, NBRC 13918, NCIMB 13269, VKM Ac-700, BCRC 13637, CGMCC 4.1206, IMSNU 20108, KCTC 9176, MTCC 1070

Strain history: KCC A-0092 <-- J. E. Thiemann Pb 1075.

NCBI tax ID(s): 28887 (species)

SI-ID 38275

ATCC 23867, DSM 43041, IAM 14288, IFO 13879, IFO 13918, JCM 3092, CCRC 13637, NCIMB 13269, VKM Ac-700, CBS 115.69, KCTC 9176, KCTC 9472, NBRC 13879, NBRC 13918, BCRC 13637, CGMCC 4.1206

Other strains from Planobispora longispora

P. longispora ST033407(HKI),

Section

Planobispora longispora Pb-1075 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil from the shore of Uramaco.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Planobispora*
	Species	**Planobispora longispora**
	Full Scientific Name (LPSN)	Planobispora longispora Thiemann and Beretta 1968 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69220]	Colony color	Beige (1001)
[Ref.: #69220]	Cultivation medium used	suter with tyrosine

[Ref.: #69220]	Colony color	Beige (1001)
[Ref.: #69220]	Cultivation medium used	suter without tyrosine

[Ref.: #69220]	Colony color	Ivory (1014)
[Ref.: #69220]	Cultivation medium used	ISP 2

[Ref.: #69220]	Colony color	Ivory (1014)
[Ref.: #69220]	Cultivation medium used	ISP 6

[Ref.: #69220]	Colony color	Light ivory (1015)
[Ref.: #69220]	Cultivation medium used	ISP 3

[Ref.: #69220]	Colony color	Light ivory (1015)
[Ref.: #69220]	Cultivation medium used	ISP 4

[Ref.: #69220]	Colony color	Oyster white (1013)
[Ref.: #69220]	Cultivation medium used	ISP 5

[Ref.: #69220]	Colony color	Oyster white (1013)
[Ref.: #69220]	Cultivation medium used	ISP 7

[Ref.: #69220]	Pigment production	no
[Ref.: #69220]	Pigment name	Melanin
[Ref.: #69220]	Pigment production	no
[Ref.: #69220]	Pigment name	soluble pigment

[Ref.: #69220]	Multicellular complex forming ability	no
[Ref.: #69220]	Multicellular complex name	Aerial mycelium
[Ref.: #69220]	Medium Name (multicellularity)	ISP 2

[Ref.: #69220]	Multicellular complex forming ability	no
[Ref.: #69220]	Multicellular complex name	Aerial mycelium
[Ref.: #69220]	Medium Name (multicellularity)	ISP 3

[Ref.: #69220]	Multicellular complex forming ability	no
[Ref.: #69220]	Multicellular complex name	Aerial mycelium
[Ref.: #69220]	Medium Name (multicellularity)	ISP 4

[Ref.: #69220]	Multicellular complex forming ability	no
[Ref.: #69220]	Multicellular complex name	Aerial mycelium
[Ref.: #69220]	Medium Name (multicellularity)	ISP 5

[Ref.: #69220]	Multicellular complex forming ability	no
[Ref.: #69220]	Multicellular complex name	Aerial mycelium
[Ref.: #69220]	Medium Name (multicellularity)	ISP 6

[Ref.: #69220]	Multicellular complex forming ability	no
[Ref.: #69220]	Multicellular complex name	Aerial mycelium
[Ref.: #69220]	Medium Name (multicellularity)	ISP 7

[Ref.: #69220]	Multicellular complex forming ability	no
[Ref.: #69220]	Multicellular complex name	Aerial mycelium
[Ref.: #69220]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69220]	Multicellular complex forming ability	no
[Ref.: #69220]	Multicellular complex name	Aerial mycelium
[Ref.: #69220]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69220]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69220]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69220]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69220]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10711]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #10711]

Culture medium growth

[Ref.: #10711]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10711]

Culture medium composition

expand / minimize

[Ref.: #10711]

Culture medium

GYM+S MEDIUM (DSMZ Medium 214)

[Ref.: #10711]

Culture medium growth

[Ref.: #10711]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #10711]	growth	28 °C
[Ref.: #19931]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10711]	Temperature range	mesophilic
[Ref.: #19931]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19931]	Spore description	Formation of spore chains (only spore pairs), spore surface smooth
[Ref.: #19931]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69220]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-9(III,VIII-H₄), MK-9(H₂), MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69220]	arabinose ChEBI	+/-	growth
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #69220]	cellulose ChEBI	-	growth
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69220]	fructose ChEBI	+/-	growth
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #69220]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69220]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69220]	mannose ChEBI	+/-	growth
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #69220]	raffinose ChEBI	-	growth
[Ref.: #69220]	rhamnose ChEBI	-	growth
[Ref.: #69220]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E, API Coryne
[Ref.: #69220]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne, API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne, API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19931]	540	+	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69220]	3714	+	-	-	+	-	+/-	+	+	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69220]	5898	not determinedn.d.	+	+/-	+/-	+	+	+	+/-	+/-	+	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10711]	Sample type/isolated from	soil from the shore of Uramaco
[Ref.: #10711]	Country	Venezuela
[Ref.: #10711]	Country ISO 3 Code	VEN
[Ref.: #10711]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Venezuela
[Ref.: #67770]	Country ISO 3 Code	VEN
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10711]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19931]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Planobispora longispora gene for 16S ribosomal RNA, partial sequence	D85494	1472	ENA	28887 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planobispora longispora NBRC 13918	GCA_016863135	contig	GenBank	28887 tax ID	*
[Ref.: #66792]	Planobispora longispora strain NBRC 13918	28887.3	wgs	PATRIC	28887 tax ID	*

[Ref.: #67770]

GC-content

71 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planobispora longispora strain NBRC 13918 PATRIC: 28887.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planobispora longispora strain NBRC 13918 PATRIC: 28887.3
[Ref.: #69480]	gram-positive	yes	88.635	no
[Ref.: #69480]	anaerobic	no	98.741	no
[Ref.: #69480]	halophile	no	94.339	yes
[Ref.: #69480]	spore-forming	yes	93.917	no
[Ref.: #69480]	glucose-util	yes	88.882	yes
[Ref.: #69480]	motile	yes	61.544	no
[Ref.: #69480]	flagellated	no	90.201	no
[Ref.: #69480]	aerobic	yes	85.884	no
[Ref.: #69480]	thermophile	no	97.681	yes
[Ref.: #69480]	glucose-ferment	no	91.492	yes

Availability in culture collections External links

[Ref.: #10711]

Culture collection no.

DSM 43041, ATCC 23867, CBS 115.69, IAM 14288, IFO 13879, IFO 13918, JCM 3092, KCC A-0092, NBRC 13879, NBRC 13918, NCIMB 13269, VKM Ac-700, BCRC 13637, CGMCC 4.1206, IMSNU 20108, KCTC 9176, MTCC 1070

[Ref.: #85601]

SI-ID 38275

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planobispora takensis sp. nov., isolated from soil.	Ngaemthao W, Suriyachadkun C, Chunhametha S, Niemhom N, Thawai C, Sanglier JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.057968-0	2014	*

References

#10711

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43041

#19931

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69220

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85601

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38275.1 )

* These data were automatically processed and therefore are not curated

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Planobispora longispora strain NBRC 13918

Planobispora longispora strain NBRC 13918

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