Name: Nonomuraea jabiensis A4036
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16573

Type strain:

Species: Nonomuraea jabiensis

Strain Designation: A4036

Culture col. no.: DSM 45507, KCTC 19870

Strain history: <- Nevzat Sahin, Ondokuz Mayis Univ., Turkey

NCBI tax ID(s): 882448 (species)

SI-ID 396859

DSM 45507

Section

Nonomuraea jabiensis A4036 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from arid soil.

Gram-positive
spiral-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Nonomuraea*
	Species	**Nonomuraea jabiensis**
	Full Scientific Name (LPSN)	Nonomuraea jabiensis Camas et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30589]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30589]	Cell shape	spiral-shaped

[Ref.: #30589]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.586

[Ref.: #69399]	Colony color	Honey yellow (1005)
[Ref.: #69399]	Cultivation medium used	ISP 6

[Ref.: #69399]	Colony color	Ochre brown (8001)
[Ref.: #69399]	Cultivation medium used	ISP 2

[Ref.: #69399]	Colony color	Ochre brown (8001)
[Ref.: #69399]	Cultivation medium used	ISP 5

[Ref.: #69399]	Colony color	Sand yellow (1002)
[Ref.: #69399]	Cultivation medium used	ISP 3

[Ref.: #69399]	Colony color	Sand yellow (1002)
[Ref.: #69399]	Cultivation medium used	ISP 4

[Ref.: #69399]	Colony color	Sand yellow (1002)
[Ref.: #69399]	Cultivation medium used	ISP 7

[Ref.: #69399]	Colony color	Sand yellow (1002)
[Ref.: #69399]	Cultivation medium used	suter with tyrosine

[Ref.: #69399]	Colony color	Sand yellow (1002)
[Ref.: #69399]	Cultivation medium used	suter without tyrosine

[Ref.: #30589]	Pigment production	no
[Ref.: #69399]	Pigment production	no
[Ref.: #69399]	Pigment name	Melanin
[Ref.: #69399]	Pigment production	no
[Ref.: #69399]	Pigment name	soluble pigment

[Ref.: #69399]	Multicellular complex forming ability	no
[Ref.: #69399]	Multicellular complex name	Aerial mycelium
[Ref.: #69399]	Medium Name (multicellularity)	ISP 2

[Ref.: #69399]	Multicellular complex forming ability	yes
[Ref.: #69399]	Multicellular complex name	Aerial mycelium
[Ref.: #69399]	Multicellular complex color	Oyster white (1013)
[Ref.: #69399]	Medium Name (multicellularity)	ISP 3

[Ref.: #69399]	Multicellular complex forming ability	yes
[Ref.: #69399]	Multicellular complex name	Aerial mycelium
[Ref.: #69399]	Multicellular complex color	Oyster white (1013)
[Ref.: #69399]	Medium Name (multicellularity)	ISP 4

[Ref.: #69399]	Multicellular complex forming ability	no
[Ref.: #69399]	Multicellular complex name	Aerial mycelium
[Ref.: #69399]	Medium Name (multicellularity)	ISP 5

[Ref.: #69399]	Multicellular complex forming ability	no
[Ref.: #69399]	Multicellular complex name	Aerial mycelium
[Ref.: #69399]	Medium Name (multicellularity)	ISP 6

[Ref.: #69399]	Multicellular complex forming ability	no
[Ref.: #69399]	Multicellular complex name	Aerial mycelium
[Ref.: #69399]	Medium Name (multicellularity)	ISP 7

[Ref.: #69399]	Multicellular complex forming ability	no
[Ref.: #69399]	Multicellular complex name	Aerial mycelium
[Ref.: #69399]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69399]	Multicellular complex forming ability	no
[Ref.: #69399]	Multicellular complex name	Aerial mycelium
[Ref.: #69399]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69399]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69399]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69399]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69399]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17454]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #17454]

Culture medium growth

[Ref.: #17454]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #17454]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #17454]

Culture medium growth

[Ref.: #17454]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #17454]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #17454]

Culture medium growth

[Ref.: #17454]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #17454]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #17454]

Culture medium growth

[Ref.: #17454]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17454]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17454]	growth	28 °C
[Ref.: #30589]	growth	20-37 °C
[Ref.: #30589]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #17454]	Temperature range	mesophilic
[Ref.: #30589]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30589]			optimum	7
[Ref.: #30589]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30589]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30589]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt		Salt conc.
[Ref.: #30589]	NaCl	growth	0-2	%
[Ref.: #30589]	NaCl	optimum	1	%
[Ref.: #69399]	NaCl	growth	0-5	%

[Ref.: #30589]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30589]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30589]	alanine ChEBI	+	carbon source
[Ref.: #69399]	arabinose ChEBI	+	growth
[Ref.: #69399]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30589]	dextrin ChEBI	+	carbon source
[Ref.: #30589]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30589]	fructose ChEBI	+	carbon source
[Ref.: #69399]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69399]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #30589]	histidine ChEBI	+	carbon source
[Ref.: #69399]	inositol ChEBI	+/-	growth
[Ref.: #30589]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30589]	leucine ChEBI	+	carbon source
[Ref.: #30589]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30589]	mannitol ChEBI	+	carbon source
[Ref.: #30589]	mannose ChEBI	+	carbon source
[Ref.: #69399]	mannose ChEBI	+	growth
[Ref.: #30589]	melibiose ChEBI	+	carbon source
[Ref.: #30589]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #30589]	phenylalanine ChEBI	+	carbon source
[Ref.: #30589]	proline ChEBI	+	carbon source
[Ref.: #69399]	raffinose ChEBI	+/-	growth
[Ref.: #30589]	rhamnose ChEBI	+	carbon source
[Ref.: #69399]	rhamnose ChEBI	+	growth
[Ref.: #30589]	ribitol ChEBI	+	carbon source
[Ref.: #30589]	serine ChEBI	+	carbon source
[Ref.: #30589]	succinate ChEBI	+	carbon source
[Ref.: #30589]	sucrose ChEBI	+	carbon source
[Ref.: #69399]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30589]	threonine ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30589]	xylose ChEBI	+	carbon source
[Ref.: #69399]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #30589]	urease	+	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69399]	3892	-	-	-	+	-	+	+	+	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69399]	6076	not determinedn.d.	+	+/-	+	-	+	+	+/-	+	+	+	+	+	+	-	+	+	+	+	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17454]	Sample type/isolated from	arid soil
[Ref.: #17454]	Geographic location (country and/or sea, region)	Habuje, Jabi region
[Ref.: #17454]	Country	Nigeria
[Ref.: #17454]	Country ISO 3 Code	NGA
[Ref.: #17454]	Continent	Africa

[Ref.: #67771]	Sample type/isolated from	From terrestial soil
[Ref.: #67771]	Country	Nigeria
[Ref.: #67771]	Country ISO 3 Code	NGA
[Ref.: #67771]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ157186 (>99% sequence identity) for Nonomuraea from Microbeatlas

Aquatic Samples
Soil Samples	16
Animal Samples
Plant Samples	8
Total Samples	24

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17454]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17454]	Nonomuraea jabiensis strain A4036 16S ribosomal RNA gene, partial sequence	HQ157186	1485	ENA	882448 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nonomuraea jabiensis DSM 45507	GCA_014204795	contig	GenBank	882448 tax ID	*
[Ref.: #66792]	Nonomuraea jabiensis strain DSM 45507	882448.3	wgs	PATRIC	882448 tax ID	*
[Ref.: #66792]	Nonomuraea jabiensis DSM 45507	2870526370	draft	JGI IMG/M	882448 tax ID	*

[Ref.: #17454]	GC-content	69.6 mol%	fluorimetric
[Ref.: #30589]	GC-content	69.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nonomuraea jabiensis strain DSM 45507 PATRIC: 882448.3
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nonomuraea jabiensis strain DSM 45507 PATRIC: 882448.3
[Ref.: #69480]	motile	no	91.467	yes
[Ref.: #69480]	flagellated	no	97.589	yes
[Ref.: #69480]	gram-positive	yes	87.186	yes
[Ref.: #69480]	anaerobic	no	98.94	yes
[Ref.: #69480]	halophile	no	91.895	no
[Ref.: #69480]	spore-forming	yes	94.122	no
[Ref.: #69480]	thermophile	no	98.863	no
[Ref.: #69480]	glucose-util	yes	87.914	yes
[Ref.: #69480]	aerobic	yes	91.592	no
[Ref.: #69480]	glucose-ferment	no	91.822	no

Availability in culture collections External links

[Ref.: #17454]

Culture collection no.

DSM 45507, KCTC 19870

[Ref.: #85600]

SI-ID 396859

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonomuraea stahlianthi sp. nov., an endophytic actinomycete isolated from the stem of Stahlianthus campanulatus.	Niemhom N, Chutrakul C, Suriyachadkun C, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002045	2017	*
Phylogeny	Nonomuraea ceibae sp. nov., an actinobacterium isolated from Ceiba speciosa rhizosphere.	Wang F, Shi J, Huang Y, Wu Y, Deng X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001782	2017	*
Phylogeny	Nonomuraea zeae sp. nov., isolated from the rhizosphere of corn (Zea mays L.).	Shen Y, Jia F, Liu C, Li J, Guo S, Zhou S, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001019	2016	*
Phylogeny	Classification of Nonomuraea sp. ATCC 39727, an actinomycete that produces the glycopeptide antibiotic A40926, as Nonomuraea gerenzanensis sp. nov.	Dalmastri C, Gastaldo L, Marcone GL, Binda E, Congiu T, Marinelli F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000810	2016	*
Phylogeny	Characterization of antibiotic producing rare actinomycete Nonomuraea sp. JAJ18 derived from an Indian coastal solar saltern.	Arul Jose P, Sivakala KK, Rajeswari P, Jebakumar SR	ScientificWorldJournal	10.1155/2014/456070	2014	*
Phylogeny	Nonomuraea jabiensis sp. nov., isolated from arid soil.	Camas M, Sazak A, Sproer C, Klenk HP, Cetin D, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.039362-0	2012	*

References

#17454

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45507

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30589

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26920 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69399

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85600

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396859.1 )

#26920

IJSEM 212 2013 ( DOI 10.1099/ijs.0.039362-0 , PubMed 22389281 )

* These data were automatically processed and therefore are not curated

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Nonomuraea jabiensis strain DSM 45507

Nonomuraea jabiensis strain DSM 45507

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