Clostridium beijerinckii (JCM 8025, IAM 19007, NRRL B-591)

Name: Clostridium beijerinckii (JCM 8025, IAM 19007, NRRL B-591)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165723

Type strain

Culture col. no. JCM 8025 IAM 19007 NRRL B-591

NCBI tax ID(s) 1520

Special Collections JCM

Links

Clostridium beijerinckii JCM 8025 is a mesophilic prokaryote of the family Clostridiaceae.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 294818

NRRL B-591

@ref 20215

Last LPSN update 2025-12-16 10:09:44

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium beijerinckii

Full scientific name Clostridium beijerinckii Donker 1926 (Approved Lists 1980)

Synonyms (1)

Clostridium diolis

BacDive ID	Other strains from **Clostridium beijerinckii** (30)	Type strain
2548	C. beijerinckii E. McCoy A-67, L.S. McClung 1671, 10026, ... (type strain)
2547	C. beijerinckii DSM 552, VKM B-1773
2549	C. beijerinckii N.O. Sjolander and McCoy, 67, 7, N.O. Sjolander ...
2550	C. beijerinckii 2287, McClung, A-14, 2287, McClung, DSM 1739, ...
2551	C. beijerinckii DSM 51, ATCC 17797 (1969)
2552	C. beijerinckii 34, Ng 34, DSM 53, ATCC 14949, NCIMB 9503, ...
2553	C. beijerinckii A-39, DSM 6422, NRRL B-592
2554	C. beijerinckii A-21, DSM 6423, NRRL B-593
2555	C. beijerinckii KT-1P, DSM 13821
2692	C. beijerinckii C8, DSM 11329, IAM 19232, JCM 7847
2819	C. beijerinckii 88-273, SH1, DSM 15410, ATCC BAA-557, DSM ...
158905	C. beijerinckii WB01-NA02, DSM 105335
165626	C. beijerinckii JCM 7833, IAM 19015
165630	C. beijerinckii JCM 7837, IAM 19225
165631	C. beijerinckii JCM 7838, IAM 19240, IFO 3859, NBRC 3859, ...
165632	C. beijerinckii JCM 7839, IAM 19092
165633	C. beijerinckii JCM 7840, IAM 19108
165685	C. beijerinckii JCM 7986, IAM 19046
165689	C. beijerinckii JCM 7990, IAM 19050
165696	C. beijerinckii JCM 7997, IAM 19060
165721	C. beijerinckii JCM 8023, ATCC 14823, ATCC 6014, IAM 19002, ...
165722	C. beijerinckii JCM 8024, IAM 19006
165724	C. beijerinckii JCM 8026, IAM 19008, NRRL B592
165725	C. beijerinckii JCM 8027, IAM 19093
165726	C. beijerinckii JCM 8028, IAM 19105
165727	C. beijerinckii JCM 8030, IAM 19091
165728	C. beijerinckii JCM 8031, IAM 19106
165729	C. beijerinckii JCM 8032, IAM 19094
165730	C. beijerinckii JCM 8033, IAM 19095
165731	C. beijerinckii JCM 8034, IAM 19098

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	96.2

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	15347 ChEBI	acetone
67770	28885 ChEBI	n-butanol

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AB647332 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	1977
Soil Samples	1985
Animal Samples	5931
Plant Samples	442
Total Samples	10335

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
67770	ASM200629v1 assembly for Clostridium beijerinckii NRRL B-591	contig	GCA_002006295	1520	2.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Clostridium beijerinckii gene for 16S ribosomal RNA, partial sequence, strain: JCM 8025	AB647332	1473		1520

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium beijerinckii NRRL B-591
NCBI: GCA_002006295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	79.60	no
125439	motility	BacteriaNetⓘ	yes	79.00	no
125439	gram_stain	BacteriaNetⓘ	positive	73.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	96.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium beijerinckii NRRL B-591
NCBI: GCA_002006295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	50.40	no
125438	anaerobic	anaerobicⓘ	yes	83.86	no
125438	aerobic	aerobicⓘ	no	92.43	no
125438	spore-forming	spore-formingⓘ	yes	78.21	no
125438	thermophilic	thermophileⓘ	no	93.41	yes
125438	flagellated	motile2+ⓘ	yes	75.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbial solvent formation revisited by comparative genome analysis.	Poehlein A, Solano JDM, Flitsch SK, Krabben P, Winzer K, Reid SJ, Jones DT, Green E, Minton NP, Daniel R, Durre P.	Biotechnol Biofuels	10.1186/s13068-017-0742-z	2017
Genetics	Towards continuous industrial bioprocessing with solventogenic and acetogenic clostridia: challenges, progress and perspectives.	Vees CA, Neuendorf CS, Pflugl S.	J Ind Microbiol Biotechnol	10.1007/s10295-020-02296-2	2020
	Biobutanol production from coffee silverskin.	Hijosa-Valsero M, Garita-Cambronero J, Paniagua-Garcia AI, Diez-Antolinez R.	Microb Cell Fact	10.1186/s12934-018-1002-z	2018
	Valorization of agricultural wastes for biofuel applications.	Awogbemi O, Kallon DVV.	Heliyon	10.1016/j.heliyon.2022.e11117	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium beijerinckii (JCM 8025, IAM 19007, NRRL B-591)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite production

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002006295

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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