Name: Nonomuraea endophytica DSM 45385
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16568

Type strain:

Species: Nonomuraea endophytica

Culture col. no.: DSM 45385, CCTCC AA 209037, JCM 31210, YIM 65601

Strain history: DSM 45385 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 65601.

NCBI tax ID(s): 714136 (species)

Section

Nonomuraea endophytica DSM 45385 is a mesophilic bacterium that was isolated from surface-sterilized sample of Artemisia annua L..

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Nonomuraea*
	Species	**Nonomuraea endophytica**
	Full Scientific Name (PNU)	Nonomuraea endophytica Li et al. 2011

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16484]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #16484]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Observation

quinones: MK-9(H₄), MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16484]	Sample type/isolated from	surface-sterilized sample of Artemisia annua L.
[Ref.: #16484]	Host species	Artemisia annua
[Ref.: #16484]	Geographic location (country and/or sea, region)	Yunnan province
[Ref.: #16484]	Country	China
[Ref.: #16484]	Country ISO 3 Code	CHN
[Ref.: #16484]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized sample of Artemisia annua L. from Yunnan Province
[Ref.: #67770]	Host species	Artemisia annua
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Nonomuraea endophytica strain YIM 65601 16S ribosomal RNA gene, partial sequence	JQ899209	642	ENA	714136 tax ID	*
[Ref.: #20218]	Nonomuraea endophytica strain YIM 65601 16S ribosomal RNA gene, partial sequence	JQ899246	649	ENA	714136 tax ID	*
[Ref.: #16484]	Nonomuraea endophytica strain YIM 65601 16S ribosomal RNA gene, partial sequence	GU367158	1518	ENA	714136 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nonomuraea endophytica DSM 45385	GCA_014203235	scaffold	GenBank	714136 tax ID	*
[Ref.: #66792]	Nonomuraea endophytica strain DSM 45385	714136.3	wgs	PATRIC	714136 tax ID	*
[Ref.: #66792]	Nonomuraea endophytica DSM 45385	2861736478	draft	JGI IMG/M	714136 tax ID	*
[Ref.: #66792]	uncultured Pelagibacteraceae bacterium AG-337-I06	GCA_902525815	contig	PATRIC	1667051 tax ID	*

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GC-content

67.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 45385, CCTCC AA 209037, JCM 31210, YIM 65601

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Associated Passport(s) in StrainInfo

865259, 865258, 865257

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonomuraea endophytica sp. nov., an endophytic actinomycete isolated from Artemisia annua L.	Li J, Zhao GZ, Huang HY, Zhu WY, Lee JC, Xu LH, Kim CJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.022558-0	2010	*
Phylogeny	Nonomuraea jabiensis sp. nov., isolated from arid soil.	Camas M, Sazak A, Sproer C, Klenk HP, Cetin D, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.039362-0	2012	*
Phylogeny	Nonomuraea guangzhouensis sp. nov., and Nonomuraea harbinensis sp. nov., two novel actinomycetes isolated from soil.	Wang S, Liu C, Zhang Y, Zhao J, Zhang X, Yang L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0058-3	2013	*
Phylogeny	Nonomuraea stahlianthi sp. nov., an endophytic actinomycete isolated from the stem of Stahlianthus campanulatus.	Niemhom N, Chutrakul C, Suriyachadkun C, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002045	2017	*
Phylogeny	Nonomuraea suaedae sp. nov., isolated from rhizosphere soil of Suaeda maritima (L.) Dumort.	Lipun K, Teo WFA, Tongpan J, Matsumoto A, Duangmal K	J Antibiot (Tokyo)	10.1038/s41429-019-0159-y	2019	*
Phylogeny	Nonomuraea typhae sp. nov., an endophytic actinomycete isolated from the root of cattail pollen (Typha angustifolia L.).	Peng C, Zhuang X, Wang Z, Gao C, Zhao J, Song J, Liu C, Shen Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004249	2020	*

References

#16484

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45385

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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