Name: Collinsella aerofaciens JCM 7790
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165615

Type strain:

Species: Collinsella aerofaciens

Culture col. no.: JCM 7790, ATCC 35085

Strain history: ATCC 35085 <-- I. A. Macdonald G 20-7.

NCBI tax ID(s): 74426 (species)

SI-ID 45972

ATCC 35085, JCM 7790

Other strains from Collinsella aerofaciens

Section

Collinsella aerofaciens JCM 7790 is a mesophilic bacterium that was isolated from Human feces.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Coriobacteriales*
	Family	*Coriobacteriaceae*
	Genus	*Collinsella*
	Species	**Collinsella aerofaciens**
	Full Scientific Name (LPSN)	Collinsella aerofaciens (Eggerth 1935) Kageyama et al. 1999

	Synonym	"Bacteroides* aerofaciens"*
	Synonym	Eubacterium aerofaciens

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Eubacterium aerofaciens gene for 16S rRNA, partial sequence	AB011814	1480	ENA	74426 tax ID
[Ref.: #67770]	Collinsella aerofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 7790	AB595135	1467	ENA	74426 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Collinsella aerofaciens ATCC 35085	GCA_025289055	scaffold	GenBank	74426 tax ID	*

[Ref.: #67770]

GC-content

60 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Collinsella aerofaciens ATCC 35085 NCBI: GCA_025289055.1
[Ref.: #69480]	motile	no	93.426	no
[Ref.: #69480]	flagellated	no	97.483	no
[Ref.: #69480]	gram-positive	yes	93.348	no
[Ref.: #69480]	anaerobic	yes	99.666	no
[Ref.: #69480]	aerobic	no	98.647	no
[Ref.: #69480]	halophile	no	85.175	no
[Ref.: #69480]	spore-forming	no	93.263	no
[Ref.: #69480]	glucose-ferment	yes	80.077	no
[Ref.: #69480]	thermophile	no	90.822	yes
[Ref.: #69480]	glucose-util	yes	85.607	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 7790, ATCC 35085

[Ref.: #114537]

SI-ID 45972

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov.	Kageyama A, Benno Y, Nakase T	Int J Syst Bacteriol	10.1099/00207713-49-2-557	1999	*
	Preparation of methyl ursodeoxycholate in an interface bioreactor: use of a mixed solvent system to increase the solubilities of substrate and product.	Oda S, Sugai T, Ohta H	J Biosci Bioeng	10.1263/jbb.92.86	2001	*
	Preparation of methyl ursodeoxycholate via microbial reduction of methyl 7-ketolithocholate in an anaerobic interface bioreactor.	Oda S, Sugai T, Ohta H	J Biosci Bioeng	10.1263/jbb.91.202	2001	*
	Synthesis of methyl ursodeoxycholate via microbial reduction of methyl 7-ketolithocholate with Eubacterium aerofaciens JCM 7790 grown on two kinds of carbon and hydride sources, glucose and mannitol.	Oda S, Sugai T, Ohta H	J Biosci Bioeng	10.1263/jbb.91.178	2001	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114537

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45972.1 )

* These data were automatically processed and therefore are not curated

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Collinsella aerofaciens ATCC 35085

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