Nonomuraea turkmeniaca (DSM 43926, ATCC 49501, IFO 14348)

Name: Nonomuraea turkmeniaca (DSM 43926, ATCC 49501, IFO 14348)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16550

Type strain

Strain Designation 3344

Culture col. no. DSM 43926 ATCC 49501 IFO 14348 IMET 9747 INA 3344 11 more

NCBI tax ID(s) 103838

Special Collections DSMZ JCM KCTC CIP Wink compendium

History <- IMET <- T.P. Preobrazhenskaya, INA IFO 14348 <-- INA 3344. CIP <- 2001, JCM <- IFO <- INA : strain 3344

Links

Nonomuraea turkmeniaca 3344 is a Gram-positive, filament-shaped bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive filament-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42518

VKM Ac-852,ATCC 49501,IFO 14348,DSM 43926,IMET 9747,JCM 6836,NRRL B-16246,CIP 107010,KCTC 9287,NBRC 14348,BCRC 16339,CCRC 16339,CGMCC 4.2106

@ref 20215

Last LPSN update 2026-02-09 11:22:00

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Nonomuraea

Species Nonomuraea turkmeniaca

Full scientific name Nonomuraea turkmeniaca corrig. (Terekhova et al. 1987) Zhang et al. 1998

Synonyms (3)

Actinomadura turkmeniaca
Nonomuria turkmeniaca
Microtetraspora turkmeniaca

BacDive ID	Other strains from **Nonomuraea turkmeniaca** (2)	Type strain
128592	N. turkmeniaca STH00385(ZIMET), MUCL 29451, HKI 0385
128593	N. turkmeniaca STH00386(ZIMET), HKI 0386

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439			91
125439	positive		99.7
123697	positive	filament-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
19983	Wine red (3005)	10-14 days	ISP 2
19983	Wine red (3005)	10-14 days	ISP 3
19983	Wine red (3005)	10-14 days	ISP 4
19983	Oxide red (3009)	10-14 days	ISP 5
19983	Yellow	10-14 days	ISP 6
19983	Oxide red (3009)	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
19983			ISP 2
19983	Aerial Mycelium	White	ISP 3
19983	Aerial Mycelium	White	ISP 4
19983			ISP 5
19983			ISP 6
19983			ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11275	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19983	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19983	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19983	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19983	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19983	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19983	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
37281	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
11275	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
123697	CIP Medium 57	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11275	positive	growth	37
19983	positive	optimum	28
37281	positive	growth	30
67770	positive	growth	28
123697	positive	growth	30-37
123697	negative	growth	5
123697	negative	growth	15
123697	negative	growth	22
123697	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19983	NaCl	positive	maximum	2.5 %
123697	NaCl		growth	0 %
123697	NaCl		growth	2 %
123697	NaCl		growth	4 %
123697	NaCl		growth	6 %
123697	NaCl		growth	8 %
123697	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₂), MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19983	22599 ChEBI	arabinose	+/-
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
19983	62968 ChEBI	cellulose	+/-
123697	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
123697	4853 ChEBI	esculin	+	hydrolysis
19983	28757 ChEBI	fructose	+/-
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
19983	17234 ChEBI	glucose	+
123697	17234 ChEBI	glucose	-	degradation
68368	25094 ChEBI	lysine	+	degradation	from API 20E
19983	29864 ChEBI	mannitol	+/-
19983	17268 ChEBI	myo-inositol	+/-
123697	17632 ChEBI	nitrate	-	reduction
123697	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
19983	16634 ChEBI	raffinose	+/-
19983	26546 ChEBI	rhamnose	+/-
19983	17992 ChEBI	sucrose	+/-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
19983	18222 ChEBI	xylose	+/-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
123697	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
123697	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
123697	17234 ChEBI	glucose		-
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
123697	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123697	catalase	+	1.11.1.6
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123697	gamma-glutamyltransferase	+	2.3.2.2
123697	gelatinase	+
68368	gelatinase	+		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
123697	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123697	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
123697	oxidase	-
123697	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
123697	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
123697	urease	+	3.5.1.5
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19983	+	+	+	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19983	not determinedn.d.	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	+	+	+	-
123697	-	+	+	+	-	+	-	-	+	-	-	+	-	+	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
11275	soil	Turkmenistan	TKM	Asia
67770	Soil	Turkmenistan	TKM	Asia
123697	Environment, Soil	Russian Federation	RUS	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11275	1	Risk group (German classification) According to TRBA 466
19983	1	German classification According to TRBA 466
123697	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID
66792	ASM588973v1 assembly for Nonomuraea turkmeniaca DSM 43926	contig	GCA_005889735	103838.3	103838

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Nonomuraea turkmeniaca 16S ribosomal RNA gene, partial sequence	AF277201	1448		103838

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nonomuraea turkmeniaca DSM 43926
NCBI: GCA_005889735

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	motility	BacteriaNetⓘ	no	91.00	no
125439	spore_formation	BacteriaNetⓘ	yes	80.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nonomuraea turkmeniaca strain DSM 43926
PATRIC: 103838.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.27	no
125438	anaerobic	anaerobicⓘ	no	93.48	no
125438	spore-forming	spore-formingⓘ	yes	87.42	no
125438	aerobic	aerobicⓘ	yes	87.61	no
125438	thermophilic	thermophileⓘ	no	96.41	yes
125438	flagellated	motile2+ⓘ	no	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Anthelmintic macrolactams from Nonomuraea turkmeniaca MA7381.	Ayers S, Zink DL, Powell JS, Brown CM, Grund A, Genilloud O, Salazar O, Thompson D, Singh SB.	J Antibiot (Tokyo)	10.1038/ja.2008.110	2008
Phylogeny	Nonomuraea maritima sp. nov., isolated from coastal sediment.	Xi L, Zhang L, Ruan J, Huang Y.	Int J Syst Evol Microbiol	10.1099/ijs.0.028266-0	2011
Phylogeny	Nonomuraea aegyptia sp. nov., a novel actinomycete isolated from a sand dune.	Hozzein WN, Goodfellow M.	Antonie Van Leeuwenhoek	10.1007/s10482-007-9145-7	2007
Phylogeny	Nonomuraea kuesteri sp. nov.	Kampfer P, Kroppenstedt RM, Grun-Wollny I.	Int J Syst Evol Microbiol	10.1099/ijs.0.63380-0	2005
Phylogeny	Nonomuraea candida sp. nov., a new species from South African soil.	Roes Ml, Meyers PR	Antonie Van Leeuwenhoek	10.1007/s10482-007-9187-x	2007
Phylogeny	Nonomuraea nitratireducens sp. nov., a new actinobacterium isolated from Suaeda australis Moq. rhizosphere.	Ou Y, Sheng Y, Hu X, Leng D, Huang J, Hu Z, Bai L, Deng Z, Kang Q, Wu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004377	2020
Phylogeny	Nonomuraea basaltis sp. nov., a siderophore-producing actinobacteria isolated from surface soil of basaltic parent material.	Saricaoglu S, Saygin H, Topkara AR, Gencbay T, Guven K, Cetin D, Sahin N, Isik K	Arch Microbiol	10.1007/s00203-020-01866-3	2020
Phylogeny	Nonomuraea flavida sp. nov., a novel species of soil actinomycete isolated from Aconitum napellus rhizosphere.	Chen S, Shi J, Li D, Wu Y, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000538	2015
Phylogeny	Nonomuraea jabiensis sp. nov., isolated from arid soil.	Camas M, Sazak A, Sproer C, Klenk HP, Cetin D, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.039362-0	2012
Phylogeny	Nonomuraea jiangxiensis sp. nov., isolated from acidic soil.	Li X, Zhang L, Ding Y, Gao Y, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.034520-0	2011
Phylogeny	Nonomuraea antimicrobica sp. nov., an endophytic actinomycete isolated from a leaf of Maytenus austroyunnanensis.	Qin S, Zhao GZ, Klenk HP, Li J, Zhu WY, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.010660-0	2009
Phylogeny	[New species, Actinomadura fulvescens sp. nov. and Actinomadura turkmeniaca sp. nov. and their antagonistic properties].	Terekhova LP, Galatenko OA, Preobrazhenskaia TP	Antibiotiki		1982

References

#11275	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43926
#19983	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37281	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68382	Automatically annotated from API zym .
#123697	Collection of Institut Pasteur ; Curators of the CIP; CIP 107010
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nonomuraea turkmeniaca (DSM 43926, ATCC 49501, IFO 14348)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_005889735

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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