Name: Bifidobacterium animalis subsp. animalis JCM 7117
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 165484

Type strain:

Species: Bifidobacterium animalis subsp. animalis

Culture col. no.: JCM 7117, ATCC 27674, LMG 18906

Strain history: T. Mitsuoka IV-117 <-- V. Scardovi RA20.

NCBI tax ID(s): 1365954 (strain), 302912 (subspecies)

SI-ID 12482

LMG 18906, ATCC 27674, JCM 7117, KCTC 3417

Special Collections

Other strains from Bifidobacterium animalis subsp. animalis

Section

Bifidobacterium animalis subsp. animalis JCM 7117 is a mesophilic bacterium that was isolated from Rabbit feces.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium animalis subsp. animalis**
	Full Scientific Name (LPSN)	Bifidobacterium animalis subsp. animalis (Mitsuoka 1969) Masco et al. 2004 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %95

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.471
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rabbit feces
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB050138 (>99% sequence identity) for Bifidobacterium animalis subclade from Microbeatlas

Aquatic Samples	4025
Soil Samples	1941
Animal Samples	125902
Plant Samples	767
Total Samples	132635

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium animalis gene for 16S rRNA, partial sequence, strain: YIT 4090	AB050138	1519	GenBank ENA	28025 tax ID
[Ref.: #124043]	Bifidobacterium animalis subsp. animalis gene for 16S rRNA, partial sequence, strain: JCM 7117.	AB507072	664	GenBank ENA	302912 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium animalis subsp. lactis ATCC 27674	GCA_001263985	scaffold	GenBank ENA	1365954 tax ID
[Ref.: #66792]	Bifidobacterium animalis subsp. lactis ATCC 27674	1365954.3	wgs	PATRIC	1365954 tax ID	*
[Ref.: #66792]	Bifidobacterium animalis lactis ATCC 27674	2648501273	draft	JGI IMG/M	1365954 tax ID	*

[Ref.: #67770]

GC-content

62.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium animalis subsp. lactis ATCC 27674 ATCC 27674 NCBI: GCA_001263985.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium animalis subsp. lactis ATCC 27674 PATRIC: 1365954.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.974	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	84.921	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.471	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.423	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.1	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 7117, ATCC 27674, LMG 18906

[Ref.: #114494]

SI-ID 12482

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114494

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12482.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Bifidobacterium animalis subsp. lactis ATCC 27674 ATCC 27674

Bifidobacterium animalis subsp. lactis ATCC 27674

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