Bifidobacterium longum subsp. longum (JCM 7055)

Name: Bifidobacterium longum subsp. longum (JCM 7055)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165472

Type strain

Culture col. no. JCM 7055

NCBI tax ID(s) 1679

Special Collections JCM

History Y. Benno <-- T. Mitsuoka IV-55 (I-54-2).

Links

Bifidobacterium longum subsp. longum JCM 7055 is a bacterium that was isolated from Infant feces.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 64970

JCM 7055

@ref 20215

Last LPSN update 2026-02-09 11:40:06

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium longum subsp. longum

Full scientific name Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)

BacDive ID	Other strains from **Bifidobacterium longum subsp. longum** (11)	Type strain
1709	B. longum subsp. longum E194b (Variant a), E194b, DSM 20219, ATCC ... (type strain)
161151	B. longum subsp. longum JCM 11340
161152	B. longum subsp. longum JCM 11341
161153	B. longum subsp. longum JCM 11342
161154	B. longum subsp. longum JCM 11343
164160	B. longum subsp. longum JCM 31944
165469	B. longum subsp. longum JCM 7050, LMG 18899
165470	B. longum subsp. longum JCM 7052, CGMCC 1.3013
165471	B. longum subsp. longum JCM 7053, CGMCC 1.3048
165473	B. longum subsp. longum JCM 7056
165474	B. longum subsp. longum JCM 7060, CGMCC 1.3049

Morphology

Cell morphology

@ref	Motility	Confidence
125438		92

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	96.5

Spore formation

@ref	Spore formation	Confidence
125438		91.394
125439		98.6

Isolation, sampling and environmental information

Isolation

67770

Sample typeInfant feces

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1489825v1 assembly for Bifidobacterium longum subsp. longum JCM 7055	chromosome	GCA_014898255	1679.266	1679	89.14

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Bifidobacterium longum subsp. longum gene for 16S rRNA, partial sequence, strain: JCM 7055.	AB116318	469		1679

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium longum subsp. longum strain JCM 7055
PATRIC: 1679.266

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	no	74.50	no
125439	gram_stain	BacteriaNetⓘ	positive	86.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	96.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium longum subsp. longum strain JCM 7055
PATRIC: 1679.266

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.86	no
125438	anaerobic	anaerobicⓘ	yes	83.86	no
125438	spore-forming	spore-formingⓘ	no	91.39	no
125438	aerobic	aerobicⓘ	no	91.98	no
125438	thermophilic	thermophileⓘ	no	90.50	no
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis.	Ventura M, Lee JH, Canchaya C, Zink R, Leahy S, Moreno-Munoz JA, O'Connell-Motherway M, Higgins D, Fitzgerald GF, O'Sullivan DJ, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.71.12.8692-8705.2005	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium longum subsp. longum (JCM 7055)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014898255

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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