Name: Bifidobacterium longum subsp. longum JCM 7052
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165470

Type strain:

Species: Bifidobacterium longum subsp. longum

Culture col. no.: JCM 7052, CGMCC 1.3013

Strain history: T. Mitsuoka IV-52.

NCBI tax ID(s): 1679 (subspecies)

Other strains from Bifidobacterium longum subsp. longum

B. longum subsp. longum E194b (Variant a), E194b, DSM 20219, ... (type strain)
B. longum subsp. longum JCM 11340
B. longum subsp. longum JCM 11341
B. longum subsp. longum JCM 11342
B. longum subsp. longum JCM 11343
B. longum subsp. longum JCM 31944
B. longum subsp. longum JCM 7050, LMG 18899
B. longum subsp. longum JCM 7053, CGMCC 1.3048
B. longum subsp. longum JCM 7055
B. longum subsp. longum JCM 7056
B. longum subsp. longum JCM 7060, CGMCC 1.3049

Section

Bifidobacterium longum subsp. longum JCM 7052 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human feces.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium longum subsp. longum**
	Full Scientific Name (LPSN)	Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.701

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.747

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC589223 (>99% sequence identity) for Bifidobacterium longum subclade from Microbeatlas

Aquatic Samples	7450
Soil Samples	1795
Animal Samples	197025
Plant Samples	785
Total Samples	207055

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium longum subsp. longum JCM 7052 gene for 16S rRNA, partial sequence	LC589223	1464	ENA	1679 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium longum subsp. longum JCM 7052	GCA_015100215	complete	GenBank	1679 tax ID	*
[Ref.: #66792]	Bifidobacterium longum subsp. longum strain JCM 7052	1679.270	complete	PATRIC	1679 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium longum subsp. longum strain JCM 7052 PATRIC: 1679.270
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium longum subsp. longum JCM 7052 NCBI: GCA_015100215.1
[Ref.: #69480]	motile	no	94.099	no
[Ref.: #69480]	flagellated	no	96.381	no
[Ref.: #69480]	gram-positive	yes	90.452	no
[Ref.: #69480]	anaerobic	yes	98.484	no
[Ref.: #69480]	aerobic	no	96.989	no
[Ref.: #69480]	halophile	no	77.918	no
[Ref.: #69480]	spore-forming	no	96.44	no
[Ref.: #69480]	glucose-util	yes	86.228	no
[Ref.: #69480]	thermophile	no	95.712	yes
[Ref.: #69480]	glucose-ferment	yes	82.725	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 7052, CGMCC 1.3013

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Mechanism of Cooperative Degradation of Gum Arabic Arabinogalactan Protein by Bifidobacterium longum Surface Enzymes.	Sasaki Y, Komeno M, Ishiwata A, Horigome A, Odamaki T, Xiao JZ, Tanaka K, Ito Y, Kitahara K, Ashida H, Fujita K	Appl Environ Microbiol	10.1128/aem.02187-21	2022	*
Genetics	Complete Genome Sequence of Bifidobacterium longum subsp. longum JCM7052.	Yamamoto I, Ueno Y, Geshi M, Inagaki Y, Odamaki T, Fujita K	Microbiol Resour Announc	10.1128/MRA.01193-20	2021	*
Metabolism	Novel 3-O-alpha-d-Galactosyl-alpha-l-Arabinofuranosidase for the Assimilation of Gum Arabic Arabinogalactan Protein in Bifidobacterium longum subsp. longum.	Sasaki Y, Horigome A, Odamaki T, Xiao JZ, Ishiwata A, Ito Y, Kitahara K, Fujita K	Appl Environ Microbiol	10.1128/AEM.02690-20	2021	*
	Characterization of a GH36 alpha-D-Galactosidase Associated with Assimilation of Gum Arabic in Bifidobacterium longum subsp. longum JCM7052.	Sasaki Y, Uchimura Y, Kitahara K, Fujita K	J Appl Glycosci (1999)	10.5458/jag.jag.JAG-2021_0004	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium longum subsp. longum strain JCM 7052

Bifidobacterium longum subsp. longum JCM 7052

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