Bifidobacterium longum subsp. infantis (JCM 7011)

Name: Bifidobacterium longum subsp. infantis (JCM 7011)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165452

Type strain

Culture col. no. JCM 7011

NCBI tax ID(s) 1682

Special Collections JCM

History JCM <-- Y. Benno <-- T. Mitsuoka IV-11 (30125 I-14-2).

Links

Bifidobacterium longum subsp. infantis JCM 7011 is a bacterium that was isolated from Infant feces.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 64954

JCM 7011

@ref 20215

Last LPSN update 2026-05-29 08:45:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium longum subsp. infantis

Full scientific name Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008

Synonyms (1)

Bifidobacterium infantis

BacDive ID	Other strains from **Bifidobacterium longum subsp. infantis** (24)	Type strain
1743	B. longum subsp. infantis S12, DSM 20088, ATCC 15697, NCTC 11817, JCM ... (type strain)
1744	B. longum subsp. infantis S76E, DSM 20090, ATCC 15702, JCM 1272, BCRC ...
1745	B. longum subsp. infantis DSM 20218, ATCC 17930, JCM 1260, BCRC 14661
143274	B. longum subsp. infantis CCUG 18157, LMG 18912
146680	B. longum subsp. infantis CCUG 31778
148902	B. longum subsp. infantis CCUG 36569
151518	B. longum subsp. infantis CCUG 44191
152130	B. longum subsp. infantis CCUG 45868
152264	B. longum subsp. infantis CCUG 46247
152772	B. longum subsp. infantis CCUG 47592
154127	B. longum subsp. infantis CCUG 52484
154128	B. longum subsp. infantis CCUG 52485
154129	B. longum subsp. infantis CCUG 52486
154130	B. longum subsp. infantis CCUG 52487
155385	B. longum subsp. infantis CCUG 57566
159328	B. longum subsp. infantis WCA-178-WT-4B, DSM 107246
161155	B. longum subsp. infantis JCM 11344
161156	B. longum subsp. infantis JCM 11345
161157	B. longum subsp. infantis JCM 11347
161180	B. longum subsp. infantis JCM 11660, CGMCC 1.3006
161197	B. longum subsp. infantis JCM 1210, ATCC 25962, BCRC 14603, CECT 4552, ...
165449	B. longum subsp. infantis JCM 7007, LMG 18901
165450	B. longum subsp. infantis JCM 7009, LMG 18902
165451	B. longum subsp. infantis JCM 7010

Morphology

Cell morphology

@ref	Motility	Confidence
125438		91

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.266

Isolation, sampling and environmental information

Isolation

67770

Sample typeInfant feces

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1735736v1 assembly for Bifidobacterium longum subsp. infantis JCM 7011	chromosome	GCA_017357365	1682.166	1682	87.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Bifidobacterium longum subsp. infantis gene for 16S rRNA, partial sequence, strain: JCM 7011.	AB116311	475		1682

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1735736v1 assembly for Bifidobacterium longum subsp. infantis JCM 7011
BV-BRC: 1682.166

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	46.15	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.81	no
125439	motility	BacteriaNetⓘ	no	61.50	no
125439	spore_formation	BacteriaNetⓘ	no	98.27	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium longum subsp. infantis strain JCM 7011
PATRIC: 1682.166

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.49	no
125438	anaerobic	anaerobicⓘ	yes	83.74	no
125438	spore-forming	spore-formingⓘ	no	86.01	no
125438	aerobic	aerobicⓘ	no	91.91	no
125438	thermophilic	thermophileⓘ	no	93.00	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Impact of milk secretor status on the fecal metabolome and microbiota of breastfed infants.	Wang A, Diana A, Rahmannia S, Gibson RS, Houghton LA, Slupsky CM.	Gut Microbes	10.1080/19490976.2023.2257273	2023
	Human milk oligosaccharides combine with Bifidobacterium longum to form the "golden shield" of the infant intestine: metabolic strategies, health effects, and mechanisms of action.	Yang S, Cai J, Su Q, Li Q, Meng X.	Gut Microbes	10.1080/19490976.2024.2430418	2024
	Potential Applications of Endo-beta-N-Acetylglucosaminidases From Bifidobacterium longum Subspecies infantis in Designing Value-Added, Next-Generation Infant Formulas.	Duman H, Kaplan M, Arslan A, Sahutoglu AS, Kayili HM, Frese SA, Karav S.	Front Nutr	10.3389/fnut.2021.646275	2021
Metabolism	Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria.	Garrido D, Ruiz-Moyano S, Lemay DG, Sela DA, German JB, Mills DA.	Sci Rep	10.1038/srep13517	2015
Metabolism	Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization.	LoCascio RG, Desai P, Sela DA, Weimer B, Mills DA.	Appl Environ Microbiol	10.1128/aem.00675-10	2010
Metabolism	A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides.	Locascio RG, Ninonuevo MR, Kronewitter SR, Freeman SL, German JB, Lebrilla CB, Mills DA.	Microb Biotechnol	10.1111/j.1751-7915.2008.00072.x	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Bifidobacterium longum subsp. infantis (JCM 7011)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017357365

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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