Escherichia fergusonii (JCM 5899, ATCC 35473, CDC 3458-74)

Name: Escherichia fergusonii (JCM 5899, ATCC 35473, CDC 3458-74)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165318

Type strain

Culture col. no. JCM 5899 ATCC 35473 CDC 3458-74

NCBI tax ID(s) 564

Special Collections JCM

History JCM <-- Y. Kosako 85565 <-- R. Sakazaki 85027 <-- CDC 3458-74 <-- New Mexico State Health Dept., USA.

Links

Escherichia fergusonii JCM 5899 is a bacterium that was isolated from Stool.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 41104

ATCC 35473,CCUG 21145,JCM 5899,BCRC 15586,CCRC 15586

@ref 20215

Last LPSN update 2026-05-29 08:45:37

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Escherichia

Species Escherichia fergusonii

Full scientific name Escherichia fergusonii Farmer et al. 1985

BacDive ID	Other strains from **Escherichia fergusonii** (24)	Type strain
4930	E. fergusonii 568-73, DSM 13698, ATCC 35469, CDC 0568-73, ... (type strain)
4931	E. fergusonii Ef137, DSM 25831
137175	E. fergusonii 3296-73, CIP 104948, ATCC 35470
143723	E. fergusonii CCUG 21144
143724	E. fergusonii CCUG 21145
143725	E. fergusonii CCUG 21146
143726	E. fergusonii CCUG 21147
143768	E. fergusonii CCUG 21203
143769	E. fergusonii CCUG 21204
145930	E. fergusonii CCUG 29925
145931	E. fergusonii CCUG 29926
145932	E. fergusonii CCUG 29927
145933	E. fergusonii CCUG 29928
145934	E. fergusonii CCUG 29929
145935	E. fergusonii CCUG 29930
145936	E. fergusonii CCUG 29931
145937	E. fergusonii CCUG 29932
145938	E. fergusonii CCUG 29933
145939	E. fergusonii CCUG 29934
145940	E. fergusonii CCUG 29935
145941	E. fergusonii CCUG 29936
145942	E. fergusonii CCUG 29937
145943	E. fergusonii CCUG 29938
165317	E. fergusonii JCM 5897, ATCC 35471, CDC 1016-74

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.75

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		94.555

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Stool	NM	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence LC462163 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	5613
Soil Samples	2111
Animal Samples	88071
Plant Samples	1835
Total Samples	97630

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM806487v1 assembly for Escherichia fergusonii ATCC 35473	complete	GCA_008064875	564.44	564	93.32
124043	PDT000066123.2 assembly for Escherichia fergusonii ATCC 35473	contig	GCA_012811855		564	36.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Escherichia fergusonii JCM 5899 gene for 16S ribosomal RNA, partial sequence	LC462163	1464		564

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM806487v1 assembly for Escherichia fergusonii ATCC 35473
BV-BRC: 564.44

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	63.27	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	79.15	no
125439	motility	BacteriaNetⓘ	yes	44.76	no
125439	spore_formation	BacteriaNetⓘ	no	94.56	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Escherichia fergusonii ATCC 35473
NCBI: GCA_008064875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.75	no
125438	anaerobic	anaerobicⓘ	no	96.34	no
125438	aerobic	aerobicⓘ	no	72.71	no
125438	spore-forming	spore-formingⓘ	no	87.88	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	yes	77.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Escherichia fergusonii Promotes Nonobese Nonalcoholic Fatty Liver Disease by Interfering With Host Hepatic Lipid Metabolism Through Its Own msRNA 23487.	Xin FZ, Zhao ZH, Liu XL, Pan Q, Wang ZX, Zeng L, Zhang QR, Ye L, Wang MY, Zhang RN, Gong ZZ, Huang LJ, Sun C, Shen F, Jiang L, Fan JG.	Cell Mol Gastroenterol Hepatol	10.1016/j.jcmgh.2021.12.003	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Escherichia fergusonii (JCM 5899, ATCC 35473, CDC 3458-74)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008064875

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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