Escherichia fergusonii (JCM 5897, ATCC 35471, CDC 1016-74)

Name: Escherichia fergusonii (JCM 5897, ATCC 35471, CDC 1016-74)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165317

Type strain

Culture col. no. JCM 5897 ATCC 35471 CDC 1016-74

NCBI tax ID(s) 564

Special Collections JCM

History Y. Kosako 85563 <-- R. Sakazaki 85025 <-- CDC 1016-74 <-- Nebraska State Health Dept., USA.

Links

Escherichia fergusonii JCM 5897 is a mesophilic prokaryote that was isolated from Stool.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 41102

ATCC 35471,CCUG 21147,JCM 5897,BCRC 15584,CCRC 15584

@ref 20215

Last LPSN update 2025-12-16 10:09:38

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Escherichia

Species Escherichia fergusonii

Full scientific name Escherichia fergusonii Farmer et al. 1985

BacDive ID	Other strains from **Escherichia fergusonii** (24)	Type strain
4930	E. fergusonii 568-73, DSM 13698, ATCC 35469, CDC 0568-73, ... (type strain)
4931	E. fergusonii Ef137, DSM 25831
137175	E. fergusonii 3296-73, CIP 104948, ATCC 35470
143723	E. fergusonii CCUG 21144
143724	E. fergusonii CCUG 21145
143725	E. fergusonii CCUG 21146
143726	E. fergusonii CCUG 21147
143768	E. fergusonii CCUG 21203
143769	E. fergusonii CCUG 21204
145930	E. fergusonii CCUG 29925
145931	E. fergusonii CCUG 29926
145932	E. fergusonii CCUG 29927
145933	E. fergusonii CCUG 29928
145934	E. fergusonii CCUG 29929
145935	E. fergusonii CCUG 29930
145936	E. fergusonii CCUG 29931
145937	E. fergusonii CCUG 29932
145938	E. fergusonii CCUG 29933
145939	E. fergusonii CCUG 29934
145940	E. fergusonii CCUG 29935
145941	E. fergusonii CCUG 29936
145942	E. fergusonii CCUG 29937
145943	E. fergusonii CCUG 29938
165318	E. fergusonii JCM 5899, ATCC 35473, CDC 3458-74

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.75

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

67770

Sample typeStool

Taxonmaps

69479

Global distribution of 16S sequence LC462162 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	5613
Soil Samples	2111
Animal Samples	88071
Plant Samples	1835
Total Samples	97630

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM806489v1 assembly for Escherichia fergusonii ATCC 35471	complete	GCA_008064895	564.45	564	94.36
124043	PDT000066121.2 assembly for Escherichia fergusonii ATCC 35471	contig	GCA_012811895		564	32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Escherichia fergusonii JCM 5897 gene for 16S ribosomal RNA, partial sequence	LC462162	1464		564

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Escherichia fergusonii ATCC 35471
NCBI: GCA_008064895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	86.30	no
125439	motility	BacteriaNetⓘ	yes	59.50	no
125439	gram_stain	BacteriaNetⓘ	negative	80.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	87.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Escherichia fergusonii ATCC 35471
NCBI: GCA_008064895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.75	no
125438	anaerobic	anaerobicⓘ	no	96.88	no
125438	aerobic	aerobicⓘ	no	69.46	no
125438	spore-forming	spore-formingⓘ	no	89.94	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	77.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Tracing the Evolutionary Pathways of Serogroup O78 Avian Pathogenic Escherichia coli.	Ha EJ, Hong SM, Kim SJ, Ahn SM, Kim HW, Choi KS, Kwon HJ.	Antibiotics (Basel)	10.3390/antibiotics12121714	2023
Phylogeny	Multiplex polymerase chain reaction for identification of Escherichia coli, Escherichia albertii and Escherichia fergusonii.	Lindsey RL, Garcia-Toledo L, Fasulo D, Gladney LM, Strockbine N.	J Microbiol Methods	10.1016/j.mimet.2017.06.005	2017
	Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria.	Vulic M, Dionisio F, Taddei F, Radman M.	Proc Natl Acad Sci U S A	10.1073/pnas.94.18.9763	1997
	The evolution of insertion sequences within enteric bacteria.	Lawrence JG, Ochman H, Hartl DL.	Genetics	10.1093/genetics/131.1.9	1992
	Insertion sequences.	Mahillon J, Chandler M.	Microbiol Mol Biol Rev	10.1128/mmbr.62.3.725-774.1998	1998

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Escherichia fergusonii (JCM 5897, ATCC 35471, CDC 1016-74)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008064895

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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