Name: Escherichia fergusonii JCM 5897
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165317

Type strain:

Species: Escherichia fergusonii

Culture col. no.: JCM 5897, ATCC 35471, CDC 1016-74

Strain history: Y. Kosako 85563 <-- R. Sakazaki 85025 <-- CDC 1016-74 <-- Nebraska State Health Dept., USA.

NCBI tax ID(s): 564 (species)

SI-ID 41102

ATCC 35471, CCUG 21147, JCM 5897, BCRC 15584, CCRC 15584

Other strains from Escherichia fergusonii

Section

Escherichia fergusonii JCM 5897 is a mesophilic bacterium that was isolated from Stool.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Escherichia*
	Species	**Escherichia fergusonii**
	Full Scientific Name (LPSN)	Escherichia fergusonii Farmer et al. 1985

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Stool
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC462162 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	5613
Soil Samples	2111
Animal Samples	88071
Plant Samples	1835
Total Samples	97630

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Escherichia fergusonii JCM 5897 gene for 16S ribosomal RNA, partial sequence	LC462162	1464	ENA	564 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Escherichia fergusonii ATCC 35471	GCA_008064895	complete	GenBank	564 tax ID	*
[Ref.: #66792]	Escherichia fergusonii strain ATCC 35471	564.45	complete	PATRIC	564 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Escherichia fergusonii ATCC 35471 NCBI: GCA_008064895.1
[Ref.: #69480]	motile	yes	64.997	no
[Ref.: #69480]	flagellated	no	77.928	no
[Ref.: #69480]	gram-positive	no	98.238	no
[Ref.: #69480]	anaerobic	no	97.452	no
[Ref.: #69480]	aerobic	yes	89.278	no
[Ref.: #69480]	halophile	no	83.088	no
[Ref.: #69480]	spore-forming	no	94.513	no
[Ref.: #69480]	thermophile	no	98.808	no
[Ref.: #69480]	glucose-util	yes	92.026	no
[Ref.: #69480]	glucose-ferment	yes	90.086	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 5897, ATCC 35471, CDC 1016-74

[Ref.: #114397]

SI-ID 41102

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114397

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41102.1 )

* These data were automatically processed and therefore are not curated

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Escherichia fergusonii ATCC 35471

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