Microbispora rosea subsp. rosea (DSM 43164, CBS 303.61, KCC A-0021)

Name: Microbispora rosea subsp. rosea (DSM 43164, CBS 303.61, KCC A-0021)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16515

Type strain

Strain Designation M-8

Culture col. no. DSM 43164 CBS 303.61 KCC A-0021 NRRL B-2637 RIA 760 12 more

NCBI tax ID(s) 58118

Special Collections DSMZ JCM KCTC

Links

Microbispora rosea subsp. rosea M-8 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 50192

MTCC 1046,DSM 43164,NRRL B-2637,JCM 3021,CCRC 13315,HUT 6564,IMET 9533,VKM Ac-635,VKM Ac-677,IFO 14039,CBS 303.61,KCTC 9304,NBRC 14039,BCRC 13315,NBRC 101907,CGMCC 4.1340

@ref 20215

Last LPSN update 2025-12-16 09:50:52

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Microbispora

Species Microbispora rosea subsp. rosea

Full scientific name Microbispora rosea subsp. rosea (Nonomura and Ohara 1957) Miyadoh et al. 1991

Synonyms (1)

"Microbispora amethystogenes subsp. amethystogenes"

BacDive ID	Other strains from **Microbispora rosea subsp. rosea** (16)	Type strain
16519	M. rosea subsp. rosea FYU M-20, DSM 43839, ATCC 12950, CBS 189.57, ... (type strain)
16514	M. rosea subsp. rosea DSM 43025, ATCC 15334, ETH 24305, IMRU 3748, ...
16516	M. rosea subsp. rosea M-22, DSM 43165, JCM 3022, KCC A-0022, NRRL ...
16517	M. rosea subsp. rosea DSM 43837, ATCC 33325, CBS 305.61, IFO 14041, ...
16518	M. rosea subsp. rosea FYU M-2, DSM 43838, ATCC 33326, CBS 306.61, ...
16520	M. rosea subsp. rosea M-17, M2-17, DSM 46157, IMET 9535
16521	M. rosea subsp. rosea M2-47, DSM 46158, IMET 9536
16522	M. rosea subsp. rosea M2-20, DSM 46159, IMET 9537
16523	M. rosea subsp. rosea M2-39, DSM 46160, IMET 9538
16524	M. rosea subsp. rosea M2-3, DSM 46161, IMET 9539
16525	M. rosea subsp. rosea M2-50, DSM 46162, IMET 9540
158995	M. rosea subsp. rosea Belal E11, DSM 44767
160093	M. rosea subsp. rosea Belal Act3, DSM 44768
164620	M. rosea subsp. rosea JCM 3365, BCRC 13370, IMSNU 22107, KCTC 9318
165983	M. rosea subsp. rosea JCM 8971, ATCC 35926, CGMCC 4.1349, IFO 14879, ...
165984	M. rosea subsp. rosea JCM 8972, ATCC 35927, CGMCC 4.1350, IFO 14875, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	96.9
125438	positive	90.717

Multimedia

@ref:	10832
multimedia content:	DSM_43164.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43164.jpg
caption:	Medium 65 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10832	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10832	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10832	positive	growth	37	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.8

Observation

67770

Observationquinones: MK-9, MK-9(H₂), MK-9, MK-9(H₂), MK-9(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
10832	soil
67770	Soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10832	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686301v1 assembly for Microbispora amethystogenes NBRC 101907	contig	GCA_016863015	1427754.3	8067078801	1427754	37.08
124043	ASM3954009v1 assembly for Microbispora amethystogenes JCM 3021	scaffold	GCA_039540095			1427754	29.56

Genome browser: GCA_016863015

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021	AB915610	938	1427754
20218	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021, R1-2B/H805	AB915619	1107	1427754
20218	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021, R1-2B/M603	AB915620	1453	1427754
20218	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021	AB915623	1106	1427754
20218	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021	AB915626	441	1427754
20218	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021	AB915629	1247	1427754
20218	Microbispora amethystogenes strain JCM 3021 16S ribosomal RNA gene, complete sequence	U48988	1413	1427754

GC content

@ref	GC-content (mol%)	Method
67770	71	thermal denaturation, midpoint method (Tm)
67770	70.5	high performance liquid chromatography (HPLC)
67770	67	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbispora amethystogenes NBRC 101907
NCBI: GCA_016863015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	60.30	no
125439	motility	BacteriaNetⓘ	no	70.50	no
125439	gram_stain	BacteriaNetⓘ	positive	96.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbispora amethystogenes strain NBRC 101907
PATRIC: 1427754.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.72	no
125438	anaerobic	anaerobicⓘ	no	88.77	no
125438	spore-forming	spore-formingⓘ	yes	87.51	no
125438	aerobic	aerobicⓘ	yes	87.64	no
125438	thermophilic	thermophileⓘ	no	96.37	yes
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Whole genome-based reclassification of several species of the genus Microbispora.	Bouras N, Machado RAR.	PLoS One	10.1371/journal.pone.0307299	2024
Phylogeny	A taxonomic review of the genus Microbispora and a proposal to transfer two species to the genus Actinomadura and to combine ten species into Microbispora rosea.	Miyadoh S, Amano S, Tohyama H, Shomura T.	J Gen Microbiol	10.1099/00221287-136-9-1905	1990
Phylogeny	Microbispora clausenae sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of a Thai medicinal plant, Clausena excavala Burm. f.	Kaewkla O, Koomsiri W, Thamchaipenet A, Franco CMM.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004518	2020
Phylogeny	Microbispora siamensis sp. nov., a thermotolerant actinomycete isolated from soil.	Boondaeng A, Ishida Y, Tamura T, Tokuyama S, Kitpreechavanich V.	Int J Syst Evol Microbiol	10.1099/ijs.0.009613-0	2009
Phylogeny	Microbispora fusca sp. nov., a novel actinomycete isolated from the ear of wheat (Triticum aestivum L.).	Zhao J, Yu B, Han C, Cao P, Yu Z, Ju H, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003725	2020
Phylogeny	Microbispora tritici sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).	Han C, Zhao J, Yu B, Shi H, Zhang C, Guo X, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01246-y	2019
Phylogeny	Microbispora camponoti sp. nov., a novel actinomycete isolated from the cuticle of Camponotus japonicus Mayr.	Han C, Liu C, Zhao J, Guo L, Lu C, Li J, Jia F, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0625-x	2015
Phylogeny	Microbispora bryophytorum sp. nov., an actinomycete isolated from moss (Bryophyta).	Li C, Zhang Y, Liu C, Wang H, Zhao J, Li L, Zhang Z, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.000095	2015

References

#10832	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43164
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbispora rosea subsp. rosea (DSM 43164, CBS 303.61, KCC A-0021)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016863015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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