Name: Microbispora rosea M-8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16515

Type strain:

Species: Microbispora rosea

Strain Designation: M-8

Culture col. no.: DSM 43164, CBS 303.61, KCC A-0021, NRRL B-2637, RIA 760, JCM 3021, BCRC 13315, CGMCC 4.1340, HUT 6564, IFM 1264, IMET 9533, KCTC 9304, MTCC 1046, NBRC 101907, VKM Ac-635, VKM Ac-677

Strain history: KCC A-0021 <-- H. Nonomura M-8.

NCBI tax ID(s): 1427754 (species)

SI-ID 50192

DSM 43164, NRRL B-2637, JCM 3021, CCRC 13315, HUT 6564, IMET 9533, VKM Ac-635, VKM Ac-677, IFO 14039, CBS 303.61, KCTC 9304, NBRC 14039, BCRC 13315, NBRC 101907, CGMCC 4.1340

Section

Microbispora rosea M-8 is a spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Microbispora*
	Species	**Microbispora rosea**
	Full Scientific Name (LPSN)	Microbispora rosea Nonomura and Ohara 1957 (Approved Lists 1980)

	Synonym	Microbispora parva
	Synonym	Microbispora karnatakensis
	Synonym	Microbispora chromogenes
	Synonym	Microbispora indica
	Synonym	Microbispora diastatica
	Synonym	Microbispora amethystogenes

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.09

[Ref.: #69480]	Motility	no Confidence in %94.036

Multimedia content

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Caption:

Medium 65 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10832]			growth	37 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %94.675
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

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Observation

quinones: MK-9, MK-9(H₂), MK-9, MK-9(H₂), MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10832]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021, R1-2B/H805	AB915619	1107	GenBank ENA	1427754 tax ID	*
[Ref.: #20218]	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021, R1-2B/M603	AB915620	1453	GenBank ENA	1427754 tax ID	*
[Ref.: #20218]	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021	AB915623	1106	GenBank ENA	1427754 tax ID	*
[Ref.: #20218]	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021	AB915626	441	GenBank ENA	1427754 tax ID	*
[Ref.: #20218]	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021	AB915629	1247	GenBank ENA	1427754 tax ID	*
[Ref.: #20218]	Microbispora amethystogenes strain JCM 3021 16S ribosomal RNA gene, complete sequence	U48988	1413	GenBank ENA	1427754 tax ID	*
[Ref.: #20218]	Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021	AB915610	938	GenBank ENA	1427754 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbispora amethystogenes NBRC 101907	GCA_016863015	contig	GenBank ENA	1427754 tax ID	*
[Ref.: #66792]	Microbispora amethystogenes strain NBRC 101907	1427754.3	wgs	PATRIC	1427754 tax ID	*

[Ref.: #67770]	GC-content	71 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	70.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	67 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbispora amethystogenes strain NBRC 101907 PATRIC: 1427754.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbispora amethystogenes strain NBRC 101907 PATRIC: 1427754.3
[Ref.: #69480]	motile	no	94.036	no
[Ref.: #69480]	gram-positive	yes	91.09	no
[Ref.: #69480]	anaerobic	no	99.248	no
[Ref.: #69480]	halophile	no	93.292	no
[Ref.: #69480]	spore-forming	yes	94.675	no
[Ref.: #69480]	thermophile	no	98.139	yes
[Ref.: #69480]	glucose-util	yes	88.957	no
[Ref.: #69480]	aerobic	yes	92	no
[Ref.: #69480]	flagellated	no	98.084	no
[Ref.: #69480]	glucose-ferment	no	92.229	no

Availability in culture collections External links

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Culture collection no.

DSM 43164, CBS 303.61, KCC A-0021, NRRL B-2637, RIA 760, JCM 3021, BCRC 13315, CGMCC 4.1340, HUT 6564, IFM 1264, IMET 9533, KCTC 9304, MTCC 1046, NBRC 101907, VKM Ac-635, VKM Ac-677

[Ref.: #85548]

SI-ID 50192

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbispora fusca sp. nov., a novel actinomycete isolated from the ear of wheat (Triticum aestivum L.).	Zhao J, Yu B, Han C, Cao P, Yu Z, Ju H, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003725	2020	*
Phylogeny	Microbispora tritici sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).	Han C, Zhao J, Yu B, Shi H, Zhang C, Guo X, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01246-y	2019	*
Phylogeny	Microbispora camponoti sp. nov., a novel actinomycete isolated from the cuticle of Camponotus japonicus Mayr.	Han C, Liu C, Zhao J, Guo L, Lu C, Li J, Jia F, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0625-x	2015	*
Phylogeny	Microbispora bryophytorum sp. nov., an actinomycete isolated from moss (Bryophyta).	Li C, Zhang Y, Liu C, Wang H, Zhao J, Li L, Zhang Z, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.000095	2015	*

References

#10832

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43164

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85548

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50192.1 )

* These data were automatically processed and therefore are not curated

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Microbispora amethystogenes strain NBRC 101907

Microbispora amethystogenes strain NBRC 101907

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