Name: Streptomyces atacamensis C60
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16502

Type strain:

Species: Streptomyces atacamensis

Strain Designation: C60

Culture col. no.: DSM 42065, CGMCC 4.7018, KACC 15492

Strain history: <- S. W. Kwon, KACC; KACC 15492

NCBI tax ID(s): 531966 (species)

SI-ID 407468

DSM 42065

Section

Streptomyces atacamensis C60 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from extreme hyper-arid soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces atacamensis**
	Full Scientific Name (LPSN)	Streptomyces atacamensis Santhanam et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30549]	Gram stain	positive

[Ref.: #69235]	Colony color	Colourless
[Ref.: #69235]	Cultivation medium used	ISP 2

[Ref.: #69235]	Colony color	Colourless
[Ref.: #69235]	Cultivation medium used	ISP 6

[Ref.: #69235]	Colony color	Honey yellow (1005)
[Ref.: #69235]	Cultivation medium used	suter without tyrosine

[Ref.: #69235]	Colony color	Ivory (1014)
[Ref.: #69235]	Cultivation medium used	ISP 7

[Ref.: #69235]	Colony color	Lemon yellow (1012)
[Ref.: #69235]	Cultivation medium used	ISP 3

[Ref.: #69235]	Colony color	Lemon yellow (1012)
[Ref.: #69235]	Cultivation medium used	ISP 5

[Ref.: #69235]	Colony color	Sand yellow (1002)
[Ref.: #69235]	Cultivation medium used	suter with tyrosine

[Ref.: #30549]	Pigment production	no
[Ref.: #69235]	Pigment production	no
[Ref.: #69235]	Pigment name	soluble pigment

[Ref.: #69235]	Multicellular complex forming ability	yes
[Ref.: #69235]	Multicellular complex name	Aerial mycelium
[Ref.: #69235]	Medium Name (multicellularity)	ISP 2

[Ref.: #69235]	Multicellular complex forming ability	yes
[Ref.: #69235]	Multicellular complex name	Aerial mycelium
[Ref.: #69235]	Medium Name (multicellularity)	ISP 3

[Ref.: #69235]	Multicellular complex forming ability	yes
[Ref.: #69235]	Multicellular complex name	Aerial mycelium
[Ref.: #69235]	Multicellular complex color	Silk grey (7044)
[Ref.: #69235]	Medium Name (multicellularity)	ISP 4

[Ref.: #69235]	Multicellular complex forming ability	no
[Ref.: #69235]	Multicellular complex name	Aerial mycelium
[Ref.: #69235]	Medium Name (multicellularity)	ISP 5

[Ref.: #69235]	Multicellular complex forming ability	no
[Ref.: #69235]	Multicellular complex name	Aerial mycelium
[Ref.: #69235]	Medium Name (multicellularity)	ISP 6

[Ref.: #69235]	Multicellular complex forming ability	no
[Ref.: #69235]	Multicellular complex name	Aerial mycelium
[Ref.: #69235]	Medium Name (multicellularity)	ISP 7

[Ref.: #69235]	Multicellular complex forming ability	yes
[Ref.: #69235]	Multicellular complex name	Aerial mycelium
[Ref.: #69235]	Multicellular complex color	Traffic white (9016), grey white (9002)
[Ref.: #69235]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69235]	Multicellular complex forming ability	no
[Ref.: #69235]	Multicellular complex name	Aerial mycelium
[Ref.: #69235]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #18107]

Caption:

Medium 65 28°C

[Ref.: #18107]

Intellectual property rights:

[Ref.: #69235]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69235]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69235]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69235]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18107]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18107]

Culture medium growth

[Ref.: #18107]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18107]

Culture medium composition

expand / minimize

[Ref.: #18107]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #18107]

Culture medium growth

[Ref.: #18107]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18107]

Culture medium composition

expand / minimize

[Ref.: #18107]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #18107]

Culture medium growth

[Ref.: #18107]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18107]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18107]			growth	28 °C
[Ref.: #30549]			growth	10-45 °C

[Ref.: #18107]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30549]			growth	04-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30549]

Oxygen tolerance

aerobe

[Ref.: #30549]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69235]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69235]	arabinose ChEBI	+	growth
[Ref.: #69235]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30549]	fructose ChEBI	+	carbon source
[Ref.: #69235]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30549]	glucose ChEBI	+	carbon source
[Ref.: #69235]	glucose ChEBI	+	growth
[Ref.: #30549]	glycerol ChEBI	+	carbon source
[Ref.: #30549]	glycogen ChEBI	+	carbon source
[Ref.: #69235]	inositol ChEBI	-	growth
[Ref.: #30549]	L-arabitol ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30549]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30549]	mannose ChEBI	+	carbon source
[Ref.: #69235]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69235]	raffinose ChEBI	+/-	growth
[Ref.: #69235]	rhamnose ChEBI	+	growth
[Ref.: #30549]	salicin ChEBI	+	carbon source
[Ref.: #30549]	sorbitol ChEBI	+	carbon source
[Ref.: #69235]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69235]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #30549]	gelatinase	+
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #30549]	urease	+	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69235]	3729	-	-	-	+	-	-	+	-	+	-	+	not determinedn.d.	+	+/-	+/-	+/-	-	-	-	+/-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69235]	5913	not determinedn.d.	+	+/-	+	-	+	+	+/-	-	-	+	+	-	-	-	+/-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18107]	Sample type/isolated from	extreme hyper-arid soil
[Ref.: #18107]	Geographic location (country and/or sea, region)	Atacama Desert, Valle de la Luna (23° 02' S 68° 20' W)
[Ref.: #18107]	Country	Chile
[Ref.: #18107]	Country ISO 3 Code	CHL
[Ref.: #18107]	Continent	Middle and South America
[Ref.: #18107]	Geographic location	-23.0333°/-68.3333°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Arid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE577171 (>99% sequence identity) for Streptomyces atacamensis from Microbeatlas

Aquatic Samples	1
Soil Samples	5
Animal Samples	3
Plant Samples
Total Samples	9

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18107]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18107]	Streptomyces atacamensis partial 16S rRNA gene, type strain C60T	HE577171	1457	ENA	531966 tax ID

[Ref.: #18107]

GC-content

71.5 mol%

Availability in culture collections External links

[Ref.: #18107]

Culture collection no.

DSM 42065, CGMCC 4.7018, KACC 15492

[Ref.: #85535]

SI-ID 407468

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces chitinivorans sp. nov., a chitinolytic strain isolated from estuarine lake sediment.	Ray L, Mishra SR, Panda AN, Das S, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina V	Int J Syst Evol Microbiol	10.1099/ijsem.0.001176	2016	*
Phylogeny	Streptomyces barkulensis sp. nov., isolated from an estuarine lake.	Ray L, Mishra SR, Panda AN, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina V	Int J Syst Evol Microbiol	10.1099/ijs.0.056614-0	2014	*
Phylogeny	Streptomyces atacamensis sp. nov., isolated from an extreme hyper-arid soil of the Atacama Desert, Chile.	Santhanam R, Okoro CK, Rong X, Huang Y, Bull AT, Weon HY, Andrews BA, Asenjo JA, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.038463-0	2011	*

References

#18107

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42065

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30549

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26880 (see below)

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69235

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85535

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407468.1 )

#26880

IJSEM 2680 2012 ( DOI 10.1099/ijs.0.038463-0 , PubMed 22199226 )

* These data were automatically processed and therefore are not curated

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