Name: Streptomyces xishensis DSM 42022
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16501

Type strain:

Species: Streptomyces xishensis

Culture col. no.: DSM 42022, CCTCC AA 2010006, YIM M 10378

Strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM M10378 <- Y. Xu

NCBI tax ID(s): 933941 (species)

SI-ID 398442

DSM 42022

Section

Streptomyces xishensis DSM 42022 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from deap-see sediment.

spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces xishensis**
	Full Scientific Name (LPSN)	Streptomyces xishensis Xu et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #69328]	Colony color	Brown beige (1011)
[Ref.: #69328]	Cultivation medium used	suter without tyrosine

[Ref.: #69328]	Colony color	Beige (1001)
[Ref.: #69328]	Cultivation medium used	ISP 6

[Ref.: #69328]	Colony color	Ivory (1014)
[Ref.: #69328]	Cultivation medium used	ISP 2

[Ref.: #69328]	Colony color	Ivory (1014)
[Ref.: #69328]	Cultivation medium used	ISP 3

[Ref.: #69328]	Colony color	Ivory (1014)
[Ref.: #69328]	Cultivation medium used	ISP 7

[Ref.: #69328]	Colony color	Ochre brown (8001)
[Ref.: #69328]	Cultivation medium used	suter with tyrosine

[Ref.: #69328]	Colony color	Sand yellow (1002)
[Ref.: #69328]	Cultivation medium used	ISP 4

[Ref.: #69328]	Colony color	Sand yellow (1002)
[Ref.: #69328]	Cultivation medium used	ISP 5

[Ref.: #30409]	Pigment production	no
[Ref.: #69328]	Pigment production	yes
[Ref.: #69328]	Pigmentation color	Ochre yellow (1024), honey yellow (1005)
[Ref.: #69328]	Pigment name	soluble pigment

[Ref.: #69328]	Multicellular complex forming ability	yes
[Ref.: #69328]	Multicellular complex name	Aerial mycelium
[Ref.: #69328]	Medium Name (multicellularity)	ISP 2

[Ref.: #69328]	Multicellular complex forming ability	yes
[Ref.: #69328]	Multicellular complex name	Aerial mycelium
[Ref.: #69328]	Multicellular complex color	Signal white (9003)
[Ref.: #69328]	Medium Name (multicellularity)	ISP 3

[Ref.: #69328]	Multicellular complex forming ability	yes
[Ref.: #69328]	Multicellular complex name	Aerial mycelium
[Ref.: #69328]	Multicellular complex color	Pure white (9010)
[Ref.: #69328]	Medium Name (multicellularity)	ISP 4

[Ref.: #69328]	Multicellular complex forming ability	yes
[Ref.: #69328]	Multicellular complex name	Aerial mycelium
[Ref.: #69328]	Multicellular complex color	Oyster white (1013)
[Ref.: #69328]	Medium Name (multicellularity)	ISP 5

[Ref.: #69328]	Multicellular complex forming ability	yes
[Ref.: #69328]	Multicellular complex name	Aerial mycelium
[Ref.: #69328]	Multicellular complex color	Pure white (9010)
[Ref.: #69328]	Medium Name (multicellularity)	ISP 6

[Ref.: #69328]	Multicellular complex forming ability	yes
[Ref.: #69328]	Multicellular complex name	Aerial mycelium
[Ref.: #69328]	Medium Name (multicellularity)	ISP 7

[Ref.: #69328]	Multicellular complex forming ability	yes
[Ref.: #69328]	Multicellular complex name	Aerial mycelium
[Ref.: #69328]	Multicellular complex color	Telegrey 4 (7047)
[Ref.: #69328]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69328]	Multicellular complex forming ability	yes
[Ref.: #69328]	Multicellular complex name	Aerial mycelium
[Ref.: #69328]	Multicellular complex color	Grey white (9002)
[Ref.: #69328]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69328]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69328]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69328]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69328]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17381]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #17381]

Culture medium growth

[Ref.: #17381]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17381]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17381]	growth	28 °C
[Ref.: #30409]	growth	28-37 °C
[Ref.: #30409]	optimum	32.5 °C

[Ref.: #17381]	Temperature range	mesophilic
[Ref.: #30409]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30409]			optimum	7
[Ref.: #30409]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30409]

Oxygen tolerance

aerobe

[Ref.: #30409]

Ability of spore formation

yes

	Salt		Salt conc.
[Ref.: #30409]	NaCl	growth	0-7	%
[Ref.: #30409]	NaCl	optimum	1.5	%
[Ref.: #69328]	NaCl	growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69328]	arabinose ChEBI	+	growth
[Ref.: #30409]	cellobiose ChEBI	+	carbon source
[Ref.: #69328]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30409]	fructose ChEBI	+	carbon source
[Ref.: #69328]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30409]	glucose ChEBI	+	carbon source
[Ref.: #69328]	glucose ChEBI	+	growth
[Ref.: #30409]	glycerol ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69328]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30409]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30409]	mannitol ChEBI	+	carbon source
[Ref.: #69328]	mannose ChEBI	-	growth
[Ref.: #30409]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69328]	raffinose ChEBI	+	growth
[Ref.: #69328]	rhamnose ChEBI	+	growth
[Ref.: #30409]	sucrose ChEBI	+	carbon source
[Ref.: #69328]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69328]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30409]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #30409]	urease	+	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69328]	3821	-	-	-	+	-	+	+	+	-	-	+	not determinedn.d.	+	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69328]	6005	not determinedn.d.	+	+/-	+	-	+	+/-	+	-	-	+	+/-	-	+	-	+	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17381]	Sample type/isolated from	deap-see sediment
[Ref.: #17381]	Geographic location (country and/or sea, region)	South China Sea, Xisha Islands sea area (17° 27' 34.988'' N 110° 28' 46.641'' E) at a depth of 1198 m
[Ref.: #17381]	Country	China
[Ref.: #17381]	Country ISO 3 Code	CHN
[Ref.: #17381]	Continent	Asia
[Ref.: #17381]	Geographic location	17.4597°/110.4800°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ585118 (>99% sequence identity) for Streptomyces xishensis subclade from Microbeatlas

Aquatic Samples	54
Soil Samples	381
Animal Samples	79
Plant Samples	51
Total Samples	565

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17381]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17381]	Streptomyces xishensis strain YIM M 10378 16S ribosomal RNA gene, partial sequence	HQ585118	1524	ENA	933941 tax ID

[Ref.: #17381]	GC-content	71.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30409]	GC-content	71.4 mol%

Availability in culture collections External links

[Ref.: #17381]

Culture collection no.

DSM 42022, CCTCC AA 2010006, YIM M 10378

[Ref.: #85534]

SI-ID 398442

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces boncukensis sp. nov., isolated from saltern soil.	Tatar D, Veyisoglu A, Saygin H, Sahin N	Arch Microbiol	10.1007/s00203-020-02036-1	2020	*
Phylogeny	Streptomyces glycovorans sp. nov., Streptomyces xishensis sp. nov. and Streptomyces abyssalis sp. nov., isolated from marine sediments.	Xu Y, He J, Tian XP, Li J, Yang LL, Xie Q, Tang SK, Chen YG, Zhang S, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035386-0	2011	*

References

#17381

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42022

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30409

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26746 (see below)

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69328

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85534

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398442.1 )

#26746

IJSEM 2371 2012 ( DOI 10.1099/ijs.0.035386-0 , PubMed 22140161 )

* These data were automatically processed and therefore are not curated

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