Name: Streptomyces gramineus JR-43
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16493

Type strain:

Species: Streptomyces gramineus

Strain Designation: JR-43

Culture col. no.: DSM 42058, KACC 15079, NBRC 107863

Strain history: <- S. W. Kwon, KACC; KACC 15079

NCBI tax ID(s): 910542 (species)

SI-ID 400923

DSM 42058

Section

Streptomyces gramineus JR-43 is an aerobe, spore-forming, mesophilic bacterium that was isolated from bamboo rhizosphere soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces gramineus**
	Full Scientific Name (LPSN)	Streptomyces gramineus Lee et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30167]	Gram stain	positive

[Ref.: #30167]

Pigment production

yes

Multimedia content

[Ref.: #18060]

Caption:

Medium 65 28°C

[Ref.: #18060]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18060]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18060]

Culture medium growth

[Ref.: #18060]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18060]

Culture medium composition

expand / minimize

[Ref.: #18060]

Culture medium

OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)

[Ref.: #18060]

Culture medium growth

[Ref.: #18060]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18060]

Culture medium composition

expand / minimize

[Ref.: #18060]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #18060]

Culture medium growth

[Ref.: #18060]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18060]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18060]	growth	28 °C
[Ref.: #30167]	growth	04-37 °C
[Ref.: #30167]	optimum	28 °C

[Ref.: #18060]	Temperature range	mesophilic
[Ref.: #30167]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30167]			growth	04-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30167]

Oxygen tolerance

aerobe

[Ref.: #30167]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30167]		NaCl		growth	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30167]	fructose ChEBI	+	carbon source
[Ref.: #30167]	glucose ChEBI	+	carbon source
[Ref.: #30167]	mannitol ChEBI	+	carbon source
[Ref.: #30167]	raffinose ChEBI	+	carbon source
[Ref.: #30167]	rhamnose ChEBI	+	carbon source
[Ref.: #30167]	sucrose ChEBI	+	carbon source
[Ref.: #30167]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #30167]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18060]	Sample type/isolated from	bamboo (Sasa borealis) rhizosphere soil
[Ref.: #18060]	Host species	Sasa borealis
[Ref.: #18060]	Geographic location (country and/or sea, region)	Damyang, Jeonnam
[Ref.: #18060]	Country	Republic of Korea
[Ref.: #18060]	Country ISO 3 Code	KOR
[Ref.: #18060]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18060]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18060]	Streptomyces gramineus strain JR-43 16S ribosomal RNA gene, partial sequence	HM748598	1422	ENA	910542 tax ID

[Ref.: #18060]	GC-content	70.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30167]	GC-content	69-71 mol%

Availability in culture collections External links

[Ref.: #18060]

Culture collection no.

DSM 42058, KACC 15079, NBRC 107863

[Ref.: #85526]

SI-ID 400923

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces olivicoloratus sp. nov., an antibiotic-producing bacterium isolated from soil.	Nguyen TM, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000404	2015	*
Phylogeny	Streptomyces fuscichromogenes sp. nov., an actinomycete from soil.	Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001573	2017	*
Phylogeny	Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.055210-0	2014	*
Phylogeny	Streptomyces gramineus sp. nov., an antibiotic-producing actinobacterium isolated from bamboo (Sasa borealis) rhizosphere soil.	Lee HJ, Han SI, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.030163-0	2011	*

References

#18060

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42058

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30167

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26517 (see below)

#85526

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400923.1 )

#26517

IJSEM 856 2012 ( DOI 10.1099/ijs.0.030163-0 , PubMed 21622836 )

* These data were automatically processed and therefore are not curated

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