Name: Streptomyces samsunensis M1463
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16481

Type strain:

Species: Streptomyces samsunensis

Strain Designation: M1463

Culture col. no.: DSM 42010, NRRL B-24803

Strain history: <- N. Sahin, Ondokuz Mayis Univ., Samsun, Turkey; M1463

NCBI tax ID(s): 459658 (species)

SI-ID 397642

DSM 42010

Other strains from Streptomyces samsunensis

S. samsunensis S3812, DSM 42107

Section

Streptomyces samsunensis M1463 is a mesophilic bacterium that builds an aerial mycelium and was isolated from rhizosphere of Robinia pseudoacacia.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces samsunensis**
	Full Scientific Name (LPSN)	Streptomyces samsunensis Sazak et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #21420]	Colony color	Light ivory (1015)
[Ref.: #21420]	Incubation period	10-14 days
[Ref.: #21420]	Cultivation medium used	ISP 6

[Ref.: #21420]	Incubation period	10-14 days
[Ref.: #21420]	Cultivation medium used	ISP 2

[Ref.: #21420]	Incubation period	10-14 days
[Ref.: #21420]	Cultivation medium used	ISP 3

[Ref.: #21420]	Incubation period	10-14 days
[Ref.: #21420]	Cultivation medium used	ISP 4

[Ref.: #21420]	Incubation period	10-14 days
[Ref.: #21420]	Cultivation medium used	ISP 5

[Ref.: #21420]	Incubation period	10-14 days
[Ref.: #21420]	Cultivation medium used	ISP 7

[Ref.: #21420]	Incubation period	10-14 days
[Ref.: #21420]	Cultivation medium used	Suter with tyrosine

[Ref.: #21420]	Incubation period	10-14 days
[Ref.: #21420]	Cultivation medium used	Suter without tyrosine

[Ref.: #21420]	Multicellular complex forming ability	yes
[Ref.: #21420]	Multicellular complex name	Aerial Mycelium
[Ref.: #21420]	Multicellular complex color	Slate grey (7015)/ Stone grey (7030)
[Ref.: #21420]	Medium Name (multicellularity)	ISP 2

[Ref.: #21420]	Multicellular complex forming ability	yes
[Ref.: #21420]	Multicellular complex name	Aerial Mycelium
[Ref.: #21420]	Multicellular complex color	Platinum grey (7036)/ Dusty grey (7037)
[Ref.: #21420]	Medium Name (multicellularity)	ISP 3

[Ref.: #21420]	Multicellular complex forming ability	yes
[Ref.: #21420]	Multicellular complex name	Aerial Mycelium
[Ref.: #21420]	Multicellular complex color	Black grey (7021) /Telegrey 1(7045)
[Ref.: #21420]	Medium Name (multicellularity)	ISP 4

[Ref.: #21420]	Multicellular complex forming ability	yes
[Ref.: #21420]	Multicellular complex name	Aerial Mycelium
[Ref.: #21420]	Multicellular complex color	Grey white (9002)/ Signal white (9003)
[Ref.: #21420]	Medium Name (multicellularity)	ISP 5

[Ref.: #21420]	Multicellular complex forming ability	no
[Ref.: #21420]	Medium Name (multicellularity)	ISP 6

[Ref.: #21420]	Multicellular complex forming ability	yes
[Ref.: #21420]	Multicellular complex name	Aerial Mycelium
[Ref.: #21420]	Multicellular complex color	Signal grey (7004)/ Telegrey 4 (7047)
[Ref.: #21420]	Medium Name (multicellularity)	ISP 7

[Ref.: #21420]	Multicellular complex forming ability	yes
[Ref.: #21420]	Multicellular complex name	Aerial Mycelium
[Ref.: #21420]	Multicellular complex color	Signal white (9003)
[Ref.: #21420]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21420]	Multicellular complex forming ability	yes
[Ref.: #21420]	Multicellular complex name	Aerial Mycelium
[Ref.: #21420]	Multicellular complex color	Signal white (9003)
[Ref.: #21420]	Medium Name (multicellularity)	Suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16791]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16791]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #21420]

Culture medium

Suter with tyrosine

[Ref.: #21420]

Culture medium growth

[Ref.: #21420]

Culture medium composition

expand / minimize

[Ref.: #21420]

Culture medium

Suter without tyrosine

[Ref.: #21420]

Culture medium growth

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16791]			growth	28 °C

[Ref.: #16791]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #21420]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21420]	arabinose ChEBI	+
[Ref.: #21420]	cellulose ChEBI	-
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21420]	fructose ChEBI	+
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21420]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #21420]	mannose ChEBI	+
[Ref.: #21420]	myo-inositol ChEBI	-
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #21420]	raffinose ChEBI	+
[Ref.: #21420]	rhamnose ChEBI	+
[Ref.: #21420]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21420]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21420]	537	-	-	-	+	-	+	+	+	+	+	+	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21420]	1057	not determinedn.d.	+	+	+/-	-	+	+	+/-	+	+	+	+	+	+	-	+	+/-	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16791]	Sample type/isolated from	rhizosphere of Robinia pseudoacacia
[Ref.: #16791]	Host species	Robinia pseudoacacia
[Ref.: #16791]	Geographic location (country and/or sea, region)	Samsun, Ondokuz Mayis Univ. campus
[Ref.: #16791]	Country	Turkey
[Ref.: #16791]	Country ISO 3 Code	TUR
[Ref.: #16791]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU077190 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	46
Soil Samples	292
Animal Samples	25
Plant Samples	98
Total Samples	461

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16791]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #21420]	Biosafety level	L1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16791]	Streptomyces samsunensis strain M1463 16S ribosomal RNA gene, partial sequence	EU077190	1478	ENA	459658 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces samsunensis DSM 42010	GCA_024519315	contig	GenBank	459658 tax ID	*

[Ref.: #16791]

GC-content

71.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces samsunensis DSM 42010 NCBI: GCA_024519315.1
[Ref.: #69480]	flagellated	no	97.926	no
[Ref.: #69480]	gram-positive	yes	88.668	no
[Ref.: #69480]	anaerobic	no	99.238	no
[Ref.: #69480]	aerobic	yes	90.972	no
[Ref.: #69480]	halophile	no	89.849	no
[Ref.: #69480]	spore-forming	yes	94.22	no
[Ref.: #69480]	motile	no	93.287	no
[Ref.: #69480]	glucose-ferment	no	90.478	yes
[Ref.: #69480]	thermophile	no	98.689	yes
[Ref.: #69480]	glucose-util	yes	90.461	yes

Availability in culture collections External links

[Ref.: #16791]

Culture collection no.

DSM 42010, NRRL B-24803

[Ref.: #85516]

SI-ID 397642

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Investigation on antimicrobial agents of the terrestrial Streptomyces sp. BCC71188.	Supong K, Sripreechasak P, Tanasupawat S, Danwisetkanjana K, Rachtawee P, Pittayakhajonwut P	Appl Microbiol Biotechnol	10.1007/s00253-016-7804-1	2016	*
Phylogeny	Antimicrobial compounds from endophytic Streptomyces sp. BCC72023 isolated from rice (Oryza sativa L.).	Supong K, Thawai C, Choowong W, Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong N, Pittayakhajonwut P	Res Microbiol	10.1016/j.resmic.2016.01.004	2016	*
Phylogeny	Streptomyces solisilvae sp. nov., isolated from tropical forest soil.	Zhou S, Yang X, Huang D, Huang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002166	2017	*
Phylogeny	Streptomyces cameroonensis sp. nov., a Geldanamycin Producer That Promotes Theobroma cacao Growth.	Boudjeko T, Tchinda RA, Zitouni M, Nana JA, Lerat S, Beaulieu C	Microbes Environ	10.1264/jsme2.ME16095	2017	*
Phylogeny	Streptomyces samsunensis sp. nov., a member of the Streptomyces violaceusniger clade isolated from the rhizosphere of Robinia pseudoacacia.	Sazak A, Sahin N, Guven K, Isik K, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.021329-0	2010	*

References

#16791

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42010

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21420

Wink, J.: Compendium of Actinobacteria . HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85516

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397642.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces samsunensis DSM 42010

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