Chitiniphilus eburneus (KCTC 72286, CCTCC AB 2019178, JCM 34322)

Name: Chitiniphilus eburneus (KCTC 72286, CCTCC AB 2019178, JCM 34322)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164754

Type strain

Culture col. no. KCTC 72286 CCTCC AB 2019178 JCM 34322

NCBI tax ID(s) 2571148

Special Collections JCM KCTC

History JCM <-- CCTCC AB 2019178 <-- Q. He; Nanjing Agric. Univ., China; HX-2-15.

Links

Chitiniphilus eburneus JCM 34322 is a bacterium that was isolated from Activated sludge from the sewage outlet of an agricultural chemical plant in Nanjing.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 24767

KCTC 72286

@ref 20215

Last LPSN update 2026-05-29 08:45:29

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Chitinibacteraceae

Genus Chitiniphilus

Species Chitiniphilus eburneus

Full scientific name Chitiniphilus eburneus Sheng et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.494

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.732

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Activated sludge from the sewage outlet of an agricultural chemical plant in Nanjing	Jiangsu province	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM504820v1 assembly for Chitiniphilus eburneus HX-2-15	contig	GCA_005048205	2571148.3	2889408400	2571148	59.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Chitiniphilus eburneus strain HX-2-15 16S ribosomal RNA gene, partial sequence	MK818507	1522		2571148
67770	Chitiniphilus eburneus strain HX-2-15 16S ribosomal RNA gene, partial sequence	MN328250	1496		2571148

GC content

@ref	GC-content (mol%)	Method
67770	63.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM504820v1 assembly for Chitiniphilus eburneus HX-2-15
NCBI: GCA_005048205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	61.81	no
125439	gram_stain	BacteriaNetⓘ	negative	89.69	no
125439	spore_formation	BacteriaNetⓘ	no	99.73	no
125439	motility	BacteriaNetⓘ	yes	78.03	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chitiniphilus eburneus HX-2-15
NCBI: GCA_005048205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.49	no
125438	anaerobic	anaerobicⓘ	no	88.84	no
125438	aerobic	aerobicⓘ	no	53.06	no
125438	spore-forming	spore-formingⓘ	no	88.44	no
125438	thermophilic	thermophileⓘ	no	97.23	yes
125438	flagellated	motile2+ⓘ	yes	76.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chitiniphilus eburneus sp. nov., a novel chitinolytic bacterium isolated from sludge.	Sheng M, Xu J, Yang Z, Zhu J, Qian M, He Q, He J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003762	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chitiniphilus eburneus (KCTC 72286, CCTCC AB 2019178, JCM 34322)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_005048205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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