Comamonas suwonensis (KEMB 1602-279, KCTC 82074, JCM 34179)

Name: Comamonas suwonensis (KEMB 1602-279, KCTC 82074, JCM 34179)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164744

Type strain

Culture col. no. KEMB 1602-279 KCTC 82074 JCM 34179

NCBI tax ID(s) 2606214

Special Collections JCM KCTC

History S.-S. Lee; Kyonggi Univ., South Korea; EJ-4.

Links

Comamonas suwonensis JCM 34179 is a mesophilic prokaryote that was isolated from Stream water from the Seo-ho river in Suwon.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 25254

KCTC 82074,JCM 34179

@ref 20215

Last LPSN update 2026-02-09 11:39:56

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Comamonas

Species Comamonas suwonensis

Full scientific name Comamonas suwonensis Park et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98
125439	negative	99.9
125439		94.1

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.9

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Stream water from the Seo-ho river in Suwon	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1284445v2 assembly for Comamonas suwonensis EJ-4	contig	GCA_012844455	2725415.3	2898754613	2606214	37.18

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Comamonas suwonensis strain EJ-4 16S ribosomal RNA gene, partial sequence	MN381948	1466		2606214

GC content

@ref	GC-content (mol%)	Method
67770	58.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Comamonas suwonensis EJ-4
NCBI: GCA_012844455

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.90	no
125439	motility	BacteriaNetⓘ	yes	94.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	82.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Comamonas suwonensis EJ-4
NCBI: GCA_012844455.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	96.67	no
125438	aerobic	aerobicⓘ	yes	84.36	no
125438	spore-forming	spore-formingⓘ	no	88.70	no
125438	thermophilic	thermophileⓘ	no	99.35	yes
125438	flagellated	motile2+ⓘ	yes	84.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comamonas suwonensis sp. nov., isolated from stream water in the Republic of Korea.	Park KH, Yu Z, Dong K, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004681	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Comamonas suwonensis (KEMB 1602-279, KCTC 82074, JCM 34179)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_012844455

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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